Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 ECEL1P2-202ENST00000465689 757 ntBASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 NTF6B-201ENST00000591913 560 ntBASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA3Q9Y5H0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 BX664615.1-201ENST00000443558 458 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 SLC25A1P4-201ENST00000567977 778 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 FAM87A-204ENST00000613235 858 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 AC011298.2-201ENST00000617989 482 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 AC006011.2-201ENST00000621313 1158 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 HLA-A-209ENST00000638375 975 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 AC096733.2-201ENST00000609937 1394 ntBASIC18.55■□□□□ 0.56
PCDHGA3Q9Y5H0 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AC004951.3-201ENST00000418645 1148 ntBASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHGA3Q9Y5H0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHGA3Q9Y5H0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms