Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC104076.2-201ENST00000448912 469 ntBASIC17■□□□□ 0.31
CLCF1Q9UBD9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 DUX4L26-201ENST00000489078 1255 ntBASIC17■□□□□ 0.31
CLCF1Q9UBD9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 BX664615.1-201ENST00000443558 458 ntBASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 AL445228.2-201ENST00000605589 952 ntBASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 AL590326.2-201ENST00000625139 305 ntBASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLCF1Q9UBD9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AL512604.3-201ENST00000569583 964 ntBASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLCF1Q9UBD9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms