Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP1AQ9HD42 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 AL512625.2-201ENST00000417533 625 ntBASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
CHMP1AQ9HD42 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 AL390719.1-204ENST00000412397 1219 ntBASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 MIR5787-201ENST00000611784 55 ntBASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHMP1AQ9HD42 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms