Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 AL031284.1-201ENST00000419297 478 ntBASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 TUBB8P6-201ENST00000436895 1288 ntBASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 RPL13AP23-201ENST00000480739 586 ntBASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNTNAP3BQ96NU0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNTNAP3BQ96NU0 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 RPSAP43-201ENST00000402237 625 ntBASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 SAPCD2P3-201ENST00000455031 850 ntBASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 AC104819.1-201ENST00000504587 486 ntBASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 ZNF259P1-201ENST00000407656 1365 ntBASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNTNAP3BQ96NU0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 AC243591.1-201ENST00000452967 1364 ntBASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 AC004967.1-201ENST00000453589 447 ntBASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 AC093909.1-201ENST00000504731 1122 ntBASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNTNAP3BQ96NU0 HLA-A-209ENST00000638375 975 ntBASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms