Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHFRQ96EP1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHFRQ96EP1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.46■□□□□ 0.71
CHFRQ96EP1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.45■□□□□ 0.7
CHFRQ96EP1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHFRQ96EP1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 GPAT2P1-201ENST00000444924 1672 ntBASIC19.44■□□□□ 0.7
CHFRQ96EP1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.44■□□□□ 0.7
CHFRQ96EP1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHFRQ96EP1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AC112907.3-201ENST00000577781 2400 ntBASIC19.43■□□□□ 0.7
CHFRQ96EP1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 HBZP1-201ENST00000354915 429 ntBASIC19.43■□□□□ 0.7
CHFRQ96EP1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AC012313.10-201ENST00000623509 926 ntBASIC19.43■□□□□ 0.7
CHFRQ96EP1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHFRQ96EP1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.43■□□□□ 0.7
CHFRQ96EP1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.42■□□□□ 0.7
CHFRQ96EP1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 AC092597.1-201ENST00000487352 616 ntBASIC19.42■□□□□ 0.7
CHFRQ96EP1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms