Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 AL031432.5-201ENST00000641059 760 ntBASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 IER3-202ENST00000376377 1350 ntBASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.18■□□□□ 0.66
HDDC3Q8N4P3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 HOMER2P1-201ENST00000455653 964 ntBASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 SDHAP1-207ENST00000440850 2000 ntBASIC19.17■□□□□ 0.66
HDDC3Q8N4P3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.16■□□□□ 0.66
HDDC3Q8N4P3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 AC026396.1-201ENST00000419388 421 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 AL450487.1-201ENST00000426799 995 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 TSPY23P-201ENST00000440136 739 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 AC140113.3-201ENST00000605663 199 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 AC011558.1-201ENST00000623459 338 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms