Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 RCC2P6-201ENST00000526625 1557 ntBASIC17.7■□□□□ 0.42
NUP54Q7Z3B4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 B3GAT3P1-201ENST00000471720 806 ntBASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 AC011506.1-201ENST00000474329 610 ntBASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 REXO1L10P-201ENST00000615707 1290 ntBASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 REXO1L12P-201ENST00000622156 912 ntBASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.69■□□□□ 0.42
NUP54Q7Z3B4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 AC011298.2-201ENST00000617989 482 ntBASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.68■□□□□ 0.42
NUP54Q7Z3B4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 MESTP1-201ENST00000404287 994 ntBASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 AC091390.4-202ENST00000476426 537 ntBASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 DGCR10-201ENST00000609839 495 ntBASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 KRT8P41-201ENST00000533985 1514 ntBASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.67■□□□□ 0.42
NUP54Q7Z3B4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
NUP54Q7Z3B4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms