Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
CCDC88AQ3V6T2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.41■■□□□ 1.34
CCDC88AQ3V6T2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC88AQ3V6T2 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.39■■□□□ 1.34
CCDC88AQ3V6T2 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 LINC01006-201ENST00000333319 2292 ntBASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 HLA-F-220ENST00000434407 884 ntBASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 AC034232.1-201ENST00000506026 1064 ntBASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC88AQ3V6T2 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 TSSC2-201ENST00000450217 709 ntBASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 AC074051.2-201ENST00000565115 352 ntBASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC88AQ3V6T2 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
CCDC88AQ3V6T2 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 DRAXINP1-201ENST00000437611 948 ntBASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 AC106795.1-205ENST00000512851 1056 ntBASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 KRT8P26-201ENST00000534154 1276 ntBASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 AC139530.3-201ENST00000620344 690 ntBASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms