Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC138932.1-201ENST00000534164 6830 ntBASIC17.1■□□□□ 0.33
H3F3AP84243 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
H3F3AP84243 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.1■□□□□ 0.33
H3F3AP84243 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.1■□□□□ 0.33
H3F3AP84243 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.1■□□□□ 0.33
H3F3AP84243 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.1■□□□□ 0.33
H3F3AP84243 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
H3F3AP84243 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.1■□□□□ 0.33
H3F3AP84243 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.1■□□□□ 0.33
H3F3AP84243 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.1■□□□□ 0.33
H3F3AP84243 DGCR10-201ENST00000609839 495 ntBASIC17.1■□□□□ 0.33
H3F3AP84243 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
H3F3AP84243 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.1■□□□□ 0.33
H3F3AP84243 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 KRT8P11-201ENST00000409686 1436 ntBASIC17.1■□□□□ 0.33
H3F3AP84243 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
H3F3AP84243 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
H3F3AP84243 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
H3F3AP84243 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.1■□□□□ 0.33
H3F3AP84243 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.1■□□□□ 0.33
H3F3AP84243 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.1■□□□□ 0.33
H3F3AP84243 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.09■□□□□ 0.33
H3F3AP84243 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.09■□□□□ 0.33
H3F3AP84243 FAM207BP-201ENST00000447172 505 ntBASIC17.09■□□□□ 0.33
H3F3AP84243 PRSS44-201ENST00000515154 1146 ntBASIC17.09■□□□□ 0.33
H3F3AP84243 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.09■□□□□ 0.33
H3F3AP84243 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.09■□□□□ 0.33
H3F3AP84243 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
H3F3AP84243 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.09■□□□□ 0.33
H3F3AP84243 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
H3F3AP84243 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.09■□□□□ 0.33
H3F3AP84243 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 FEM1AP3-201ENST00000403722 1741 ntBASIC17.09■□□□□ 0.33
H3F3AP84243 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
H3F3AP84243 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
H3F3AP84243 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
H3F3AP84243 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
H3F3AP84243 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
H3F3AP84243 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 AC096733.2-201ENST00000609937 1394 ntBASIC17.08■□□□□ 0.32
H3F3AP84243 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
H3F3AP84243 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 AL596275.1-201ENST00000423464 877 ntBASIC17.08■□□□□ 0.32
H3F3AP84243 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
H3F3AP84243 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
H3F3AP84243 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
H3F3AP84243 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.08■□□□□ 0.32
H3F3AP84243 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.08■□□□□ 0.32
H3F3AP84243 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
H3F3AP84243 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.08■□□□□ 0.32
H3F3AP84243 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 FP475955.4-201ENST00000623131 1990 ntBASIC17.08■□□□□ 0.32
H3F3AP84243 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
H3F3AP84243 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 IRX1P1-201ENST00000438849 1838 ntBASIC17.07■□□□□ 0.32
H3F3AP84243 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.07■□□□□ 0.32
H3F3AP84243 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
H3F3AP84243 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
H3F3AP84243 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.07■□□□□ 0.32
H3F3AP84243 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
H3F3AP84243 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
H3F3AP84243 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.07■□□□□ 0.32
H3F3AP84243 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms