Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH13P55290 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CDH13P55290 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CDH13P55290 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH13P55290 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH13P55290 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH13P55290 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH13P55290 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH13P55290 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CDH13P55290 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 AC007613.1-201ENST00000572811 2597 ntBASIC18.69■□□□□ 0.58
CDH13P55290 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 AC009113.1-201ENST00000570267 2443 ntBASIC18.69■□□□□ 0.58
CDH13P55290 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH13P55290 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.69■□□□□ 0.58
CDH13P55290 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH13P55290 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CDH13P55290 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH13P55290 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CDH13P55290 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH13P55290 POM121L13P-201ENST00000422362 380 ntBASIC18.68■□□□□ 0.58
CDH13P55290 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CDH13P55290 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH13P55290 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH13P55290 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH13P55290 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 FEM1AP3-201ENST00000403722 1741 ntBASIC18.68■□□□□ 0.58
CDH13P55290 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
CDH13P55290 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH13P55290 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH13P55290 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH13P55290 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CDH13P55290 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH13P55290 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.67■□□□□ 0.58
CDH13P55290 AL355802.2-201ENST00000402069 882 ntBASIC18.67■□□□□ 0.58
CDH13P55290 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms