Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
LIMK1P53667 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIMK1P53667 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.89■□□□□ 0.61
LIMK1P53667 AL645929.1-201ENST00000420084 975 ntBASIC18.89■□□□□ 0.61
LIMK1P53667 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.89■□□□□ 0.61
LIMK1P53667 TSSC2-201ENST00000450217 709 ntBASIC18.89■□□□□ 0.61
LIMK1P53667 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMK1P53667 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LIMK1P53667 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.89■□□□□ 0.61
LIMK1P53667 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMK1P53667 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMK1P53667 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMK1P53667 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 SPDYE15P-201ENST00000424157 909 ntBASIC18.88■□□□□ 0.61
LIMK1P53667 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.88■□□□□ 0.61
LIMK1P53667 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMK1P53667 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMK1P53667 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMK1P53667 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.88■□□□□ 0.61
LIMK1P53667 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
LIMK1P53667 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMK1P53667 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.88■□□□□ 0.61
LIMK1P53667 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LIMK1P53667 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 HBZP1-201ENST00000354915 429 ntBASIC18.87■□□□□ 0.61
LIMK1P53667 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.87■□□□□ 0.61
LIMK1P53667 AC009078.2-202ENST00000463353 338 ntBASIC18.87■□□□□ 0.61
LIMK1P53667 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMK1P53667 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMK1P53667 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
LIMK1P53667 MIR3180-1-201ENST00000580374 94 ntBASIC18.87■□□□□ 0.61
LIMK1P53667 MIR3180-3-201ENST00000584616 94 ntBASIC18.87■□□□□ 0.61
LIMK1P53667 AL121672.3-201ENST00000608644 468 ntBASIC18.87■□□□□ 0.61
LIMK1P53667 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMK1P53667 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LIMK1P53667 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIMK1P53667 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LIMK1P53667 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LIMK1P53667 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMK1P53667 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 AL160237.2-201ENST00000556165 472 ntBASIC18.86■□□□□ 0.61
LIMK1P53667 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 IFNL4P1-201ENST00000607083 540 ntBASIC18.86■□□□□ 0.61
LIMK1P53667 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMK1P53667 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIMK1P53667 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIMK1P53667 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMK1P53667 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMK1P53667 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
LIMK1P53667 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMK1P53667 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms