Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.03■□□□□ 0.8
LIG3P49916 AC079598.2-202ENST00000546624 1451 ntBASIC20.03■□□□□ 0.8
LIG3P49916 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LIG3P49916 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.02■□□□□ 0.8
LIG3P49916 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.02■□□□□ 0.8
LIG3P49916 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
LIG3P49916 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.02■□□□□ 0.8
LIG3P49916 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
LIG3P49916 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.02■□□□□ 0.8
LIG3P49916 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.02■□□□□ 0.8
LIG3P49916 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.02■□□□□ 0.8
LIG3P49916 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.02■□□□□ 0.8
LIG3P49916 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.02■□□□□ 0.8
LIG3P49916 RN7SL471P-201ENST00000580476 299 ntBASIC20.02■□□□□ 0.8
LIG3P49916 AL031963.3-201ENST00000606441 850 ntBASIC20.02■□□□□ 0.8
LIG3P49916 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIG3P49916 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.02■□□□□ 0.8
LIG3P49916 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.02■□□□□ 0.8
LIG3P49916 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LIG3P49916 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.02■□□□□ 0.79
LIG3P49916 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIG3P49916 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIG3P49916 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIG3P49916 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.02■□□□□ 0.79
LIG3P49916 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIG3P49916 KRT8P20-201ENST00000423953 1409 ntBASIC20.02■□□□□ 0.79
LIG3P49916 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LIG3P49916 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LIG3P49916 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
LIG3P49916 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LIG3P49916 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.01■□□□□ 0.79
LIG3P49916 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
LIG3P49916 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.01■□□□□ 0.79
LIG3P49916 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.01■□□□□ 0.79
LIG3P49916 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LIG3P49916 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.01■□□□□ 0.79
LIG3P49916 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIG3P49916 KRT8P17-201ENST00000453110 1448 ntBASIC20.01■□□□□ 0.79
LIG3P49916 AC009113.1-201ENST00000570267 2443 ntBASIC20.01■□□□□ 0.79
LIG3P49916 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.01■□□□□ 0.79
LIG3P49916 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
LIG3P49916 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LIG3P49916 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20■□□□□ 0.79
LIG3P49916 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
LIG3P49916 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LIG3P49916 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20■□□□□ 0.79
LIG3P49916 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20■□□□□ 0.79
LIG3P49916 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 C1QBPP2-201ENST00000528754 825 ntBASIC20■□□□□ 0.79
LIG3P49916 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20■□□□□ 0.79
LIG3P49916 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20■□□□□ 0.79
LIG3P49916 AC066615.1-201ENST00000640911 628 ntBASIC20■□□□□ 0.79
LIG3P49916 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20■□□□□ 0.79
LIG3P49916 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20■□□□□ 0.79
LIG3P49916 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
LIG3P49916 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIG3P49916 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms