Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.89■□□□□ 0.77
PTPN9P43378 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.89■□□□□ 0.77
PTPN9P43378 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.89■□□□□ 0.77
PTPN9P43378 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.89■□□□□ 0.77
PTPN9P43378 AP000692.2-201ENST00000608391 879 ntBASIC19.89■□□□□ 0.77
PTPN9P43378 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.89■□□□□ 0.77
PTPN9P43378 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PTPN9P43378 AC098818.2-201ENST00000564925 2320 ntBASIC19.88■□□□□ 0.77
PTPN9P43378 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN9P43378 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PTPN9P43378 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN9P43378 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
PTPN9P43378 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PTPN9P43378 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.88■□□□□ 0.77
PTPN9P43378 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.88■□□□□ 0.77
PTPN9P43378 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.88■□□□□ 0.77
PTPN9P43378 CKBP1-201ENST00000565489 1086 ntBASIC19.88■□□□□ 0.77
PTPN9P43378 DGCR10-201ENST00000609839 495 ntBASIC19.88■□□□□ 0.77
PTPN9P43378 AC026471.5-201ENST00000615068 467 ntBASIC19.88■□□□□ 0.77
PTPN9P43378 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PTPN9P43378 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN9P43378 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PTPN9P43378 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.87■□□□□ 0.77
PTPN9P43378 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.87■□□□□ 0.77
PTPN9P43378 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.87■□□□□ 0.77
PTPN9P43378 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PTPN9P43378 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
PTPN9P43378 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
PTPN9P43378 AL355355.2-201ENST00000442321 338 ntBASIC19.87■□□□□ 0.77
PTPN9P43378 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
PTPN9P43378 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PTPN9P43378 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN9P43378 REXO1L10P-201ENST00000615707 1290 ntBASIC19.87■□□□□ 0.77
PTPN9P43378 REXO1L12P-201ENST00000622156 912 ntBASIC19.87■□□□□ 0.77
PTPN9P43378 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.87■□□□□ 0.77
PTPN9P43378 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN9P43378 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN9P43378 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN9P43378 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PTPN9P43378 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN9P43378 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.86■□□□□ 0.77
PTPN9P43378 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.86■□□□□ 0.77
PTPN9P43378 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.86■□□□□ 0.77
PTPN9P43378 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN9P43378 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.85■□□□□ 0.77
PTPN9P43378 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.85■□□□□ 0.77
PTPN9P43378 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.85■□□□□ 0.77
PTPN9P43378 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.85■□□□□ 0.77
PTPN9P43378 AC096733.2-201ENST00000609937 1394 ntBASIC19.85■□□□□ 0.77
PTPN9P43378 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms