Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.53■■□□□ 1.04
HTTP42858 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
HTTP42858 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC21.53■■□□□ 1.04
HTTP42858 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.53■■□□□ 1.04
HTTP42858 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.53■■□□□ 1.04
HTTP42858 AP001271.2-201ENST00000624018 1556 ntBASIC21.53■■□□□ 1.04
HTTP42858 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HTTP42858 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.53■■□□□ 1.04
HTTP42858 AC027796.2-201ENST00000575326 344 ntBASIC21.53■■□□□ 1.04
HTTP42858 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.53■■□□□ 1.04
HTTP42858 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 AC233702.3-201ENST00000578656 1387 ntBASIC21.52■■□□□ 1.04
HTTP42858 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.52■■□□□ 1.04
HTTP42858 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.52■■□□□ 1.04
HTTP42858 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.52■■□□□ 1.04
HTTP42858 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC21.52■■□□□ 1.04
HTTP42858 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.52■■□□□ 1.04
HTTP42858 MIR7706-201ENST00000613747 67 ntBASIC21.52■■□□□ 1.04
HTTP42858 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HTTP42858 AF238378.1-201ENST00000526806 358 ntBASIC21.52■■□□□ 1.04
HTTP42858 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.52■■□□□ 1.04
HTTP42858 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
HTTP42858 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.52■■□□□ 1.03
HTTP42858 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
HTTP42858 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HTTP42858 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.51■■□□□ 1.03
HTTP42858 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.51■■□□□ 1.03
HTTP42858 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HTTP42858 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HTTP42858 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.51■■□□□ 1.03
HTTP42858 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.51■■□□□ 1.03
HTTP42858 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HTTP42858 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HTTP42858 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HTTP42858 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.51■■□□□ 1.03
HTTP42858 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.51■■□□□ 1.03
HTTP42858 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
HTTP42858 RNPS1P1-201ENST00000507437 918 ntBASIC21.5■■□□□ 1.03
HTTP42858 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.5■■□□□ 1.03
HTTP42858 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.5■■□□□ 1.03
HTTP42858 AP001005.1-201ENST00000571755 1248 ntBASIC21.5■■□□□ 1.03
HTTP42858 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.5■■□□□ 1.03
HTTP42858 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.5■■□□□ 1.03
HTTP42858 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.5■■□□□ 1.03
HTTP42858 KRT18P67-201ENST00000432816 1264 ntBASIC21.5■■□□□ 1.03
HTTP42858 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.5■■□□□ 1.03
HTTP42858 AL157888.1-201ENST00000631930 593 ntBASIC21.5■■□□□ 1.03
HTTP42858 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HTTP42858 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.5■■□□□ 1.03
HTTP42858 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 AL391807.1-203ENST00000604392 2365 ntBASIC21.49■■□□□ 1.03
HTTP42858 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.49■■□□□ 1.03
HTTP42858 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.49■■□□□ 1.03
HTTP42858 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 PMS2P2-201ENST00000425039 1128 ntBASIC21.49■■□□□ 1.03
HTTP42858 AL139424.1-201ENST00000607572 797 ntBASIC21.49■■□□□ 1.03
HTTP42858 AC148477.8-201ENST00000624298 468 ntBASIC21.49■■□□□ 1.03
HTTP42858 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HTTP42858 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HTTP42858 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.49■■□□□ 1.03
HTTP42858 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HTTP42858 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HTTP42858 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
HTTP42858 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HTTP42858 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms