Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HNF4AP41235 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HNF4AP41235 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 AL161938.1-201ENST00000569833 2180 ntBASIC18.54■□□□□ 0.56
HNF4AP41235 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HNF4AP41235 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HNF4AP41235 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 HTR7P1-201ENST00000538670 1336 ntBASIC18.53■□□□□ 0.56
HNF4AP41235 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 AL160286.2-201ENST00000567150 934 ntBASIC18.53■□□□□ 0.56
HNF4AP41235 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.53■□□□□ 0.56
HNF4AP41235 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.53■□□□□ 0.56
HNF4AP41235 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.53■□□□□ 0.56
HNF4AP41235 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HNF4AP41235 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 TNXA-203ENST00000507684 2038 ntBASIC18.52■□□□□ 0.56
HNF4AP41235 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HNF4AP41235 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
HNF4AP41235 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.52■□□□□ 0.56
HNF4AP41235 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.52■□□□□ 0.56
HNF4AP41235 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.52■□□□□ 0.56
HNF4AP41235 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.52■□□□□ 0.56
HNF4AP41235 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HNF4AP41235 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.52■□□□□ 0.55
HNF4AP41235 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.52■□□□□ 0.55
HNF4AP41235 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HNF4AP41235 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HNF4AP41235 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.52■□□□□ 0.55
HNF4AP41235 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HNF4AP41235 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HNF4AP41235 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HNF4AP41235 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.51■□□□□ 0.55
HNF4AP41235 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HNF4AP41235 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
HNF4AP41235 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.51■□□□□ 0.55
HNF4AP41235 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.51■□□□□ 0.55
HNF4AP41235 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.51■□□□□ 0.55
HNF4AP41235 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HNF4AP41235 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HNF4AP41235 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HNF4AP41235 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms