Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 SOX15-203ENST00000570788 1093 ntBASIC14.56□□□□□ -0.08
HLA-DMBP28068 AC060766.5-201ENST00000590539 871 ntBASIC14.56□□□□□ -0.08
HLA-DMBP28068 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AL138781.2-201ENST00000617896 1843 ntBASIC14.56□□□□□ -0.08
HLA-DMBP28068 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 AC120498.8-201ENST00000614275 531 ntBASIC14.55□□□□□ -0.08
HLA-DMBP28068 ITM2C-210ENST00000620962 501 ntBASIC14.55□□□□□ -0.08
HLA-DMBP28068 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HLA-DMBP28068 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
HLA-DMBP28068 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 ABHD17AP6-201ENST00000458502 1044 ntBASIC14.54□□□□□ -0.08
HLA-DMBP28068 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.54□□□□□ -0.08
HLA-DMBP28068 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HLA-DMBP28068 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms