Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL8A1P27658 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL8A1P27658 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.69■□□□□ 0.26
COL8A1P27658 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL8A1P27658 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.69■□□□□ 0.26
COL8A1P27658 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.69■□□□□ 0.26
COL8A1P27658 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL8A1P27658 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 AL121912.1-201ENST00000603683 238 ntBASIC16.69■□□□□ 0.26
COL8A1P27658 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL8A1P27658 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.69■□□□□ 0.26
COL8A1P27658 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL8A1P27658 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL8A1P27658 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.69■□□□□ 0.26
COL8A1P27658 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
COL8A1P27658 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 TMEM179-206ENST00000616017 1645 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 PHGDH-210ENST00000641115 1638 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
COL8A1P27658 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 CHCHD2P8-201ENST00000429873 447 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 HMGN1P19-201ENST00000436976 333 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 KRT16P4-201ENST00000453883 522 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 KRT8P26-201ENST00000534154 1276 ntBASIC16.68■□□□□ 0.26
COL8A1P27658 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.68■□□□□ 0.26
COL8A1P27658 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.68■□□□□ 0.26
COL8A1P27658 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.68■□□□□ 0.26
COL8A1P27658 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.68■□□□□ 0.26
COL8A1P27658 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL8A1P27658 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.68■□□□□ 0.26
COL8A1P27658 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL8A1P27658 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.68■□□□□ 0.26
COL8A1P27658 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL8A1P27658 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.67■□□□□ 0.26
COL8A1P27658 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
COL8A1P27658 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL8A1P27658 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.67■□□□□ 0.26
COL8A1P27658 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL8A1P27658 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.67■□□□□ 0.26
COL8A1P27658 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.67■□□□□ 0.26
COL8A1P27658 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.67■□□□□ 0.26
COL8A1P27658 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL8A1P27658 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL8A1P27658 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.67■□□□□ 0.26
COL8A1P27658 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.66■□□□□ 0.26
COL8A1P27658 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL8A1P27658 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
COL8A1P27658 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.66■□□□□ 0.26
COL8A1P27658 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.66■□□□□ 0.26
COL8A1P27658 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.66■□□□□ 0.26
COL8A1P27658 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 SLC25A1P1-201ENST00000528351 927 ntBASIC16.66■□□□□ 0.26
COL8A1P27658 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL8A1P27658 TPSP2-201ENST00000561760 610 ntBASIC16.66■□□□□ 0.26
COL8A1P27658 AC138894.3-201ENST00000603787 634 ntBASIC16.66■□□□□ 0.26
COL8A1P27658 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.66■□□□□ 0.26
COL8A1P27658 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL8A1P27658 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms