Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
COL5A1P20908 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.37■□□□□ 0.53
COL5A1P20908 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 HLA-F-220ENST00000434407 884 ntBASIC18.37■□□□□ 0.53
COL5A1P20908 SEC1P-202ENST00000473944 940 ntBASIC18.37■□□□□ 0.53
COL5A1P20908 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.37■□□□□ 0.53
COL5A1P20908 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A1P20908 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 GPAT2P1-201ENST00000444924 1672 ntBASIC18.36■□□□□ 0.53
COL5A1P20908 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL5A1P20908 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 CHCHD2P8-201ENST00000429873 447 ntBASIC18.36■□□□□ 0.53
COL5A1P20908 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.36■□□□□ 0.53
COL5A1P20908 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.36■□□□□ 0.53
COL5A1P20908 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A1P20908 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A1P20908 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A1P20908 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.35■□□□□ 0.53
COL5A1P20908 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A1P20908 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.35■□□□□ 0.53
COL5A1P20908 AC012615.1-201ENST00000565797 1299 ntBASIC18.35■□□□□ 0.53
COL5A1P20908 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A1P20908 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.35■□□□□ 0.53
COL5A1P20908 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.35■□□□□ 0.53
COL5A1P20908 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL5A1P20908 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A1P20908 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A1P20908 AP002383.4-201ENST00000442518 975 ntBASIC18.35■□□□□ 0.53
COL5A1P20908 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A1P20908 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A1P20908 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL5A1P20908 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL5A1P20908 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 FAAHP1-202ENST00000446499 1238 ntBASIC18.34■□□□□ 0.53
COL5A1P20908 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.34■□□□□ 0.53
COL5A1P20908 TPSP2-201ENST00000561760 610 ntBASIC18.34■□□□□ 0.53
COL5A1P20908 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.34■□□□□ 0.53
COL5A1P20908 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
COL5A1P20908 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL5A1P20908 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.33■□□□□ 0.53
COL5A1P20908 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A1P20908 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A1P20908 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.33■□□□□ 0.53
COL5A1P20908 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.33■□□□□ 0.53
COL5A1P20908 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.33■□□□□ 0.53
COL5A1P20908 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
COL5A1P20908 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.33■□□□□ 0.53
COL5A1P20908 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.33■□□□□ 0.53
COL5A1P20908 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.33■□□□□ 0.53
COL5A1P20908 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.33■□□□□ 0.53
COL5A1P20908 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A1P20908 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A1P20908 ZNF815P-204ENST00000434898 1737 ntBASIC18.33■□□□□ 0.53
COL5A1P20908 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL5A1P20908 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL5A1P20908 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.33■□□□□ 0.52
COL5A1P20908 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms