Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.69■□□□□ 0.74
COL9A1P20849 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL9A1P20849 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.68■□□□□ 0.74
COL9A1P20849 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL9A1P20849 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.68■□□□□ 0.74
COL9A1P20849 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.68■□□□□ 0.74
COL9A1P20849 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.68■□□□□ 0.74
COL9A1P20849 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 RPSAP43-201ENST00000402237 625 ntBASIC19.68■□□□□ 0.74
COL9A1P20849 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 CHCHD2P8-201ENST00000429873 447 ntBASIC19.68■□□□□ 0.74
COL9A1P20849 CYMP-203ENST00000474680 1263 ntBASIC19.68■□□□□ 0.74
COL9A1P20849 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.68■□□□□ 0.74
COL9A1P20849 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.68■□□□□ 0.74
COL9A1P20849 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL9A1P20849 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.67■□□□□ 0.74
COL9A1P20849 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COL9A1P20849 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL9A1P20849 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 AC004967.1-201ENST00000453589 447 ntBASIC19.67■□□□□ 0.74
COL9A1P20849 Z85996.1-201ENST00000494644 937 ntBASIC19.67■□□□□ 0.74
COL9A1P20849 AC104819.1-201ENST00000504587 486 ntBASIC19.67■□□□□ 0.74
COL9A1P20849 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.67■□□□□ 0.74
COL9A1P20849 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.67■□□□□ 0.74
COL9A1P20849 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.67■□□□□ 0.74
COL9A1P20849 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
COL9A1P20849 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.67■□□□□ 0.74
COL9A1P20849 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.67■□□□□ 0.74
COL9A1P20849 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.67■□□□□ 0.74
COL9A1P20849 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL9A1P20849 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL9A1P20849 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL9A1P20849 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.66■□□□□ 0.74
COL9A1P20849 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.66■□□□□ 0.74
COL9A1P20849 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 KRT8P26-201ENST00000534154 1276 ntBASIC19.66■□□□□ 0.74
COL9A1P20849 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.66■□□□□ 0.74
COL9A1P20849 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 ZNF259P1-201ENST00000407656 1365 ntBASIC19.66■□□□□ 0.74
COL9A1P20849 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.66■□□□□ 0.74
COL9A1P20849 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.66■□□□□ 0.74
COL9A1P20849 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL9A1P20849 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL9A1P20849 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.65■□□□□ 0.74
COL9A1P20849 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.65■□□□□ 0.74
COL9A1P20849 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL9A1P20849 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 RPL13AP23-201ENST00000480739 586 ntBASIC19.65■□□□□ 0.74
COL9A1P20849 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.65■□□□□ 0.74
COL9A1P20849 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL9A1P20849 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.65■□□□□ 0.74
COL9A1P20849 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.65■□□□□ 0.74
COL9A1P20849 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.65■□□□□ 0.74
COL9A1P20849 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms