Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DERL1-203ENST00000419562 918 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB1P09429 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.57■■□□□ 1.2
HMGB1P09429 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
HMGB1P09429 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 CR392000.1-201ENST00000624770 1228 ntBASIC22.57■■□□□ 1.2
HMGB1P09429 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.57■■□□□ 1.2
HMGB1P09429 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
HMGB1P09429 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB1P09429 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 AC006333.2-201ENST00000607957 2099 ntBASIC22.57■■□□□ 1.2
HMGB1P09429 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
HMGB1P09429 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.56■■□□□ 1.2
HMGB1P09429 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 PRSS44-201ENST00000515154 1146 ntBASIC22.56■■□□□ 1.2
HMGB1P09429 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.56■■□□□ 1.2
HMGB1P09429 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.56■■□□□ 1.2
HMGB1P09429 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.56■■□□□ 1.2
HMGB1P09429 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
HMGB1P09429 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
HMGB1P09429 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB1P09429 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 RCC2P6-201ENST00000526625 1557 ntBASIC22.55■■□□□ 1.2
HMGB1P09429 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.55■■□□□ 1.2
HMGB1P09429 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 AC004951.3-201ENST00000418645 1148 ntBASIC22.55■■□□□ 1.2
HMGB1P09429 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
HMGB1P09429 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.55■■□□□ 1.2
HMGB1P09429 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
HMGB1P09429 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
HMGB1P09429 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB1P09429 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.54■■□□□ 1.2
HMGB1P09429 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 PEX7-202ENST00000367756 680 ntTSL 3 BASIC22.54■■□□□ 1.2
HMGB1P09429 AL158047.1-201ENST00000445918 881 ntBASIC22.54■■□□□ 1.2
HMGB1P09429 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.54■■□□□ 1.2
HMGB1P09429 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.54■■□□□ 1.2
HMGB1P09429 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC22.54■■□□□ 1.2
HMGB1P09429 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.54■■□□□ 1.2
HMGB1P09429 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.54■■□□□ 1.2
HMGB1P09429 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB1P09429 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
HMGB1P09429 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
HMGB1P09429 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.53■■□□□ 1.2
HMGB1P09429 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.53■■□□□ 1.2
HMGB1P09429 AC091390.4-202ENST00000476426 537 ntBASIC22.53■■□□□ 1.2
HMGB1P09429 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
HMGB1P09429 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.53■■□□□ 1.2
HMGB1P09429 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.53■■□□□ 1.2
HMGB1P09429 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC22.53■■□□□ 1.2
HMGB1P09429 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 KRT8P11-201ENST00000409686 1436 ntBASIC22.53■■□□□ 1.2
HMGB1P09429 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.53■■□□□ 1.2
HMGB1P09429 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB1P09429 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC22.53■■□□□ 1.2
HMGB1P09429 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
HMGB1P09429 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms