Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC24.54■■□□□ 1.52
PTCD1O75127 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
PTCD1O75127 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.54■■□□□ 1.52
PTCD1O75127 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PTCD1O75127 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.53■■□□□ 1.52
PTCD1O75127 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC24.53■■□□□ 1.52
PTCD1O75127 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC24.53■■□□□ 1.52
PTCD1O75127 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 ATP5G2P1-201ENST00000433580 426 ntBASIC24.53■■□□□ 1.52
PTCD1O75127 RASA4DP-201ENST00000460726 1199 ntBASIC24.53■■□□□ 1.52
PTCD1O75127 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 AC092119.3-201ENST00000612618 583 ntBASIC24.53■■□□□ 1.52
PTCD1O75127 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCD1O75127 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC24.52■■□□□ 1.52
PTCD1O75127 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.52■■□□□ 1.52
PTCD1O75127 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC24.52■■□□□ 1.52
PTCD1O75127 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC24.52■■□□□ 1.52
PTCD1O75127 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 AC024243.1-201ENST00000609234 778 ntBASIC24.52■■□□□ 1.52
PTCD1O75127 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC24.52■■□□□ 1.52
PTCD1O75127 USP39-204ENST00000409766 2033 ntTSL 2 BASIC24.52■■□□□ 1.52
PTCD1O75127 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCD1O75127 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC24.51■■□□□ 1.51
PTCD1O75127 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC24.51■■□□□ 1.51
PTCD1O75127 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.51■■□□□ 1.51
PTCD1O75127 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 NPAP1P7-201ENST00000613027 823 ntBASIC24.51■■□□□ 1.51
PTCD1O75127 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCD1O75127 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCD1O75127 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
PTCD1O75127 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
PTCD1O75127 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.5■■□□□ 1.51
PTCD1O75127 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.5■■□□□ 1.51
PTCD1O75127 TCF3P1-201ENST00000423021 1937 ntBASIC24.5■■□□□ 1.51
PTCD1O75127 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCD1O75127 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC24.49■■□□□ 1.51
PTCD1O75127 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
PTCD1O75127 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC24.49■■□□□ 1.51
PTCD1O75127 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC24.49■■□□□ 1.51
PTCD1O75127 AL645929.1-201ENST00000420084 975 ntBASIC24.49■■□□□ 1.51
PTCD1O75127 TSPY21P-201ENST00000433481 731 ntBASIC24.49■■□□□ 1.51
PTCD1O75127 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms