Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.68■□□□□ 0.58
SDC3O75056 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC3O75056 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.68■□□□□ 0.58
SDC3O75056 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SDC3O75056 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC3O75056 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC3O75056 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC3O75056 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
SDC3O75056 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC3O75056 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC3O75056 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SDC3O75056 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
SDC3O75056 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SDC3O75056 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 VENTXP5-201ENST00000523979 775 ntBASIC18.67■□□□□ 0.58
SDC3O75056 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.67■□□□□ 0.58
SDC3O75056 AL121894.2-201ENST00000602977 491 ntBASIC18.67■□□□□ 0.58
SDC3O75056 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
SDC3O75056 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 AL157384.1-201ENST00000445995 2473 ntBASIC18.67■□□□□ 0.58
SDC3O75056 LINC01006-201ENST00000333319 2292 ntBASIC18.67■□□□□ 0.58
SDC3O75056 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC3O75056 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SDC3O75056 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDC3O75056 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.67■□□□□ 0.58
SDC3O75056 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SDC3O75056 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.66■□□□□ 0.58
SDC3O75056 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SDC3O75056 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 AP000523.1-201ENST00000398242 1049 ntBASIC18.66■□□□□ 0.58
SDC3O75056 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.66■□□□□ 0.58
SDC3O75056 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.66■□□□□ 0.58
SDC3O75056 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
SDC3O75056 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.66■□□□□ 0.58
SDC3O75056 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC3O75056 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.65■□□□□ 0.58
SDC3O75056 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.65■□□□□ 0.58
SDC3O75056 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.65■□□□□ 0.58
SDC3O75056 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 ZNF815P-204ENST00000434898 1737 ntBASIC18.65■□□□□ 0.58
SDC3O75056 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC3O75056 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC3O75056 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC3O75056 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SDC3O75056 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms