Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
CACNA1FO60840 AC116562.4-201ENST00000641316 2276 ntBASIC24.1■■□□□ 1.45
CACNA1FO60840 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.1■■□□□ 1.45
CACNA1FO60840 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CACNA1FO60840 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
CACNA1FO60840 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
CACNA1FO60840 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC24.09■■□□□ 1.45
CACNA1FO60840 KRT18P41-201ENST00000518924 1277 ntBASIC24.09■■□□□ 1.45
CACNA1FO60840 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.09■■□□□ 1.45
CACNA1FO60840 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
CACNA1FO60840 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
CACNA1FO60840 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC24.09■■□□□ 1.45
CACNA1FO60840 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CACNA1FO60840 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC24.09■■□□□ 1.45
CACNA1FO60840 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1FO60840 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1FO60840 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC24.08■■□□□ 1.45
CACNA1FO60840 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CACNA1FO60840 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
CACNA1FO60840 LIN28AP1-201ENST00000429574 405 ntBASIC24.08■■□□□ 1.45
CACNA1FO60840 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.08■■□□□ 1.45
CACNA1FO60840 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
CACNA1FO60840 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC24.08■■□□□ 1.45
CACNA1FO60840 AC083849.1-201ENST00000615227 514 ntBASIC24.08■■□□□ 1.45
CACNA1FO60840 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC24.08■■□□□ 1.45
CACNA1FO60840 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CACNA1FO60840 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CACNA1FO60840 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC24.08■■□□□ 1.44
CACNA1FO60840 YBX1P2-201ENST00000489612 999 ntBASIC24.07■■□□□ 1.44
CACNA1FO60840 GPX4-207ENST00000589115 812 ntTSL 2 BASIC24.07■■□□□ 1.44
CACNA1FO60840 FAM87A-204ENST00000613235 858 ntBASIC24.07■■□□□ 1.44
CACNA1FO60840 CR769767.2-201ENST00000622735 460 ntBASIC24.07■■□□□ 1.44
CACNA1FO60840 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
CACNA1FO60840 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
CACNA1FO60840 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
CACNA1FO60840 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 AL512604.3-201ENST00000569583 964 ntBASIC24.07■■□□□ 1.44
CACNA1FO60840 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CACNA1FO60840 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.07■■□□□ 1.44
CACNA1FO60840 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC24.06■■□□□ 1.44
CACNA1FO60840 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC24.06■■□□□ 1.44
CACNA1FO60840 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.06■■□□□ 1.44
CACNA1FO60840 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC24.06■■□□□ 1.44
CACNA1FO60840 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.06■■□□□ 1.44
CACNA1FO60840 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.06■■□□□ 1.44
CACNA1FO60840 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC24.06■■□□□ 1.44
CACNA1FO60840 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.06■■□□□ 1.44
CACNA1FO60840 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
CACNA1FO60840 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CACNA1FO60840 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC24.05■■□□□ 1.44
CACNA1FO60840 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24.05■■□□□ 1.44
CACNA1FO60840 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 AL138966.2-201ENST00000621997 464 ntBASIC24.05■■□□□ 1.44
CACNA1FO60840 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC24.05■■□□□ 1.44
CACNA1FO60840 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.05■■□□□ 1.44
CACNA1FO60840 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 TMPOP1-202ENST00000424642 1267 ntBASIC24.05■■□□□ 1.44
CACNA1FO60840 AC022616.7-201ENST00000525383 220 ntBASIC24.05■■□□□ 1.44
CACNA1FO60840 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC24.05■■□□□ 1.44
CACNA1FO60840 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC24.05■■□□□ 1.44
CACNA1FO60840 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CACNA1FO60840 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms