Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 AC005332.8-201ENST00000622750 2735 ntBASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM49D1C9J1S8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.14■□□□□ 0.66
TRIM49D1C9J1S8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM49D1C9J1S8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM49D1C9J1S8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 AC026185.1-201ENST00000445748 174 ntBASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 KRT18P16-201ENST00000510337 1294 ntBASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 AC091874.3-201ENST00000512672 1195 ntBASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 IKBKGP1-201ENST00000612193 1073 ntBASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRIM49D1C9J1S8 BICD1-207ENST00000551848 1962 ntBASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM49D1C9J1S8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms