Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AC117947.1-201ENST00000427448 529 ntBASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AL353719.1-201ENST00000566847 864 ntBASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 WWOX-216ENST00000569818 525 ntBASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 NTF6B-201ENST00000591913 560 ntBASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 AL023803.3-201ENST00000615559 522 ntBASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRAV40A0A0B4J280 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 AP003041.3-201ENST00000527151 707 ntBASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 LINC01238-205ENST00000567549 1107 ntBASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 AL512604.3-201ENST00000569583 964 ntBASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV40A0A0B4J280 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 AC022616.7-201ENST00000525383 220 ntBASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 AC139887.4-201ENST00000607877 719 ntBASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms