Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.35■■■□□ 2.45
NKX2-3Q8TAU0 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NKX2-3Q8TAU0 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NKX2-3Q8TAU0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NKX2-3Q8TAU0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
NKX2-3Q8TAU0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.33■■■□□ 2.45
NKX2-3Q8TAU0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.33■■■□□ 2.45
NKX2-3Q8TAU0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L13-201ENST00000554103 1267 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L15-201ENST00000611059 1267 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L23-201ENST00000615195 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L24-201ENST00000617576 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L22-201ENST00000618238 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L20-201ENST00000619712 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L21-201ENST00000622058 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L10-201ENST00000622460 1267 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DUX4L25-201ENST00000624915 1269 ntBASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
NKX2-3Q8TAU0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NKX2-3Q8TAU0 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
NKX2-3Q8TAU0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NKX2-3Q8TAU0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.31■■■□□ 2.44
NKX2-3Q8TAU0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.3■■■□□ 2.44
NKX2-3Q8TAU0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
NKX2-3Q8TAU0 AP004833.2-201ENST00000532228 1454 ntBASIC30.3■■■□□ 2.44
NKX2-3Q8TAU0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.29■■■□□ 2.44
NKX2-3Q8TAU0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.29■■■□□ 2.44
NKX2-3Q8TAU0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
NKX2-3Q8TAU0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.27■■■□□ 2.44
NKX2-3Q8TAU0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.27■■■□□ 2.44
NKX2-3Q8TAU0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
NKX2-3Q8TAU0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NKX2-3Q8TAU0 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.26■■■□□ 2.44
NKX2-3Q8TAU0 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.26■■■□□ 2.44
NKX2-3Q8TAU0 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.26■■■□□ 2.44
NKX2-3Q8TAU0 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NKX2-3Q8TAU0 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.26■■■□□ 2.43
NKX2-3Q8TAU0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
NKX2-3Q8TAU0 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.26■■■□□ 2.43
NKX2-3Q8TAU0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NKX2-3Q8TAU0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.24■■■□□ 2.43
NKX2-3Q8TAU0 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
NKX2-3Q8TAU0 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.23■■■□□ 2.43
NKX2-3Q8TAU0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
NKX2-3Q8TAU0 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NKX2-3Q8TAU0 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NKX2-3Q8TAU0 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NKX2-3Q8TAU0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NKX2-3Q8TAU0 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NKX2-3Q8TAU0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NKX2-3Q8TAU0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NKX2-3Q8TAU0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
NKX2-3Q8TAU0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.19■■■□□ 2.42
NKX2-3Q8TAU0 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NKX2-3Q8TAU0 RNF126P1-201ENST00000567452 1320 ntBASIC30.18■■■□□ 2.42
NKX2-3Q8TAU0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NKX2-3Q8TAU0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.17■■■□□ 2.42
NKX2-3Q8TAU0 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
NKX2-3Q8TAU0 DRD5P2-201ENST00000421395 2012 ntBASIC30.17■■■□□ 2.42
NKX2-3Q8TAU0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NKX2-3Q8TAU0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NKX2-3Q8TAU0 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.15■■■□□ 2.42
NKX2-3Q8TAU0 GPX1-201ENST00000419349 1106 ntBASIC30.15■■■□□ 2.42
NKX2-3Q8TAU0 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NKX2-3Q8TAU0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NKX2-3Q8TAU0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
NKX2-3Q8TAU0 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NKX2-3Q8TAU0 AC110285.7-201ENST00000624417 1536 ntBASIC30.12■■■□□ 2.41
NKX2-3Q8TAU0 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.12■■■□□ 2.41
NKX2-3Q8TAU0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.12■■■□□ 2.41
NKX2-3Q8TAU0 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NKX2-3Q8TAU0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NKX2-3Q8TAU0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NKX2-3Q8TAU0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NKX2-3Q8TAU0 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NKX2-3Q8TAU0 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.09■■■□□ 2.41
NKX2-3Q8TAU0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
NKX2-3Q8TAU0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.09■■■□□ 2.41
NKX2-3Q8TAU0 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
NKX2-3Q8TAU0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms