Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 DUX4L14-201ENST00000621227 1267 ntBASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 AC142086.6-201ENST00000621154 1765 ntBASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 AC110285.7-201ENST00000624417 1536 ntBASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 MIR7108-201ENST00000614319 87 ntBASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L13-201ENST00000554103 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L15-201ENST00000611059 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L23-201ENST00000615195 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L24-201ENST00000617576 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L22-201ENST00000618238 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L20-201ENST00000619712 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L21-201ENST00000622058 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L10-201ENST00000622460 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L25-201ENST00000624915 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 AP002414.2-202ENST00000590929 1450 ntBASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.18■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CR559946.2-201ENST00000623684 991 ntBASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 MIR3648-2-201ENST00000581792 180 ntBASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 MIR3648-1-201ENST00000615959 180 ntBASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 AC016575.1-201ENST00000607026 382 ntBASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms