Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MTCO3P40-201ENST00000392516 676 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 Y_RNA.599-201ENST00000410489 109 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 ZNF90P2-204ENST00000419323 1075 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC093106.2-201ENST00000428212 385 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 HMGB3P12-201ENST00000438745 556 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 RPL37P6-201ENST00000460682 294 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 PPIAP15-201ENST00000479662 484 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-352P-201ENST00000516908 107 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 AC012507.3-201ENST00000603556 477 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 CR381653.2-201ENST00000624041 768 ntBASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC9Q9Y3X0 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC090740.1-201ENST00000623193 2262 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 Y_RNA.22-201ENST00000362492 102 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 BX842559.1-201ENST00000419615 532 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC245054.1-201ENST00000420944 258 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 RPL36AP6-201ENST00000435770 321 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC023598.1-201ENST00000472521 361 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AP006587.4-201ENST00000526053 529 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC090132.2-201ENST00000615881 347 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC026585.1-201ENST00000619582 524 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC022106.2-201ENST00000620114 757 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC007998.5-201ENST00000622938 237 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AL034408.1-202ENST00000636088 415 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC068137.3-201ENST00000639191 341 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 AC073869.6-201ENST00000640656 341 ntBASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC9Q9Y3X0 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 ZNF285B-201ENST00000561698 1767 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL121834.1-202ENST00000404494 277 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 U3.42-201ENST00000408746 214 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 Z92545.1-201ENST00000411782 234 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 CKS1BP6-201ENST00000424932 240 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 RPS3AP44-201ENST00000425466 790 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC009237.8-201ENST00000445492 379 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC013267.1-201ENST00000458227 267 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 RPL38P1-201ENST00000460914 211 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AP001893.2-201ENST00000526949 202 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC004024.1-201ENST00000549244 247 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 ZNF519P2-201ENST00000557032 169 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AL121992.2-201ENST00000606262 256 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC008536.2-201ENST00000607284 349 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 AC068792.1-201ENST00000621354 417 ntBASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC9Q9Y3X0 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-1120P-201ENST00000362988 108 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 Y_RNA.367-201ENST00000365544 101 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 SMIM11P1-201ENST00000369586 178 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 MIR1-2-201ENST00000384961 85 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL591034.1-201ENST00000407447 340 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL691449.1-201ENST00000426570 421 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 MTCO2P19-201ENST00000427513 598 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 TIMM9P3-201ENST00000428659 274 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms