RNA–Protein interactions for RNA: ENST00000438745.1

HMGB3P12-201, Transcript of high mobility group box 3 pseudogene 12, humanhuman

BASIC

Gene HMGB3P12, Length 556 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P12-201ENST00000438745 AEBP2Q6ZN18 517 aaPredicted RBP20.92■□□□□ 0.94
HMGB3P12-201ENST00000438745 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
HMGB3P12-201ENST00000438745 SENP3Q9H4L4 574 aaPredicted RBP17.67■□□□□ 0.42
HMGB3P12-201ENST00000438745 PHF23Q9BUL5 403 aaPredicted RBP17.54■□□□□ 0.4
HMGB3P12-201ENST00000438745 FOXD1Q16676 465 aa16.6■□□□□ 0.25
HMGB3P12-201ENST00000438745 PLPPR3Q6T4P5 718 aa16.06■□□□□ 0.16
HMGB3P12-201ENST00000438745 PPP6R1Q9UPN7 881 aa15.59■□□□□ 0.09
HMGB3P12-201ENST00000438745 ADRA2BP18089 450 aa15.53■□□□□ 0.08
HMGB3P12-201ENST00000438745 PIAS4Q8N2W9 510 aaPredicted RBP15.46■□□□□ 0.07
HMGB3P12-201ENST00000438745 MSH5O43196 834 aa15.36■□□□□ 0.05
HMGB3P12-201ENST00000438745 POTEDQ86YR6 584 aa15.11■□□□□ 0.01
HMGB3P12-201ENST00000438745 MAPK8IP2Q13387 824 aaPredicted RBP14.29□□□□□ -0.12
HMGB3P12-201ENST00000438745 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
HMGB3P12-201ENST00000438745 SCAF1Q9H7N4 1312 aaKnown RBP14.12□□□□□ -0.15
HMGB3P12-201ENST00000438745 DMRT2Q9Y5R5 561 aa14.05□□□□□ -0.16
HMGB3P12-201ENST00000438745 CNKSR2Q8WXI2 1034 aa13.78□□□□□ -0.2
HMGB3P12-201ENST00000438745 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
HMGB3P12-201ENST00000438745 KCNA4P22459 653 aa13.59□□□□□ -0.23
HMGB3P12-201ENST00000438745 HOXD11P31277 338 aaPredicted RBP13.59□□□□□ -0.23
HMGB3P12-201ENST00000438745 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
HMGB3P12-201ENST00000438745 DCAF8L1A6NGE4 600 aa13.53□□□□□ -0.24
HMGB3P12-201ENST00000438745 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
HMGB3P12-201ENST00000438745 DNAJC5BQ9UF47 199 aa13.28□□□□□ -0.28
HMGB3P12-201ENST00000438745 CACNB1Q02641 598 aaPredicted RBP13.26□□□□□ -0.29
HMGB3P12-201ENST00000438745 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
HMGB3P12-201ENST00000438745 C1QBPQ07021 282 aaKnown RBP12.93□□□□□ -0.34
HMGB3P12-201ENST00000438745 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.9□□□□□ -0.34
HMGB3P12-201ENST00000438745 SLC4A1APQ9BWU0 796 aaKnown RBP12.88□□□□□ -0.35
HMGB3P12-201ENST00000438745 SLC4A2P04920 1241 aa12.84□□□□□ -0.35
HMGB3P12-201ENST00000438745 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
HMGB3P12-201ENST00000438745 SPINK5Q9NQ38 1064 aaPredicted RBP12.55□□□□□ -0.4
HMGB3P12-201ENST00000438745 FOXD4L1Q9NU39 408 aa12.55□□□□□ -0.4
HMGB3P12-201ENST00000438745 ZBTB22O15209 634 aa12.52□□□□□ -0.41
HMGB3P12-201ENST00000438745 MYCNP04198 464 aaPredicted RBP12.47□□□□□ -0.41
HMGB3P12-201ENST00000438745 CAPN15O75808 1086 aa12.45□□□□□ -0.42
HMGB3P12-201ENST00000438745 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.43□□□□□ -0.42
HMGB3P12-201ENST00000438745 HNRNPUL2Q1KMD3 747 aaKnown RBP12.43□□□□□ -0.42
HMGB3P12-201ENST00000438745 DSG3P32926 999 aa12.39□□□□□ -0.43
HMGB3P12-201ENST00000438745 SAMD1Q6SPF0 538 aaPredicted RBP12.38□□□□□ -0.43
HMGB3P12-201ENST00000438745 APLP2Q06481 763 aa12.32□□□□□ -0.44
HMGB3P12-201ENST00000438745 CSRNP3Q8WYN3 585 aa12.32□□□□□ -0.44
HMGB3P12-201ENST00000438745 TRHP20396 242 aaPredicted RBP12.29□□□□□ -0.44
HMGB3P12-201ENST00000438745 ABCB7O75027 752 aa12.24□□□□□ -0.45
HMGB3P12-201ENST00000438745 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
HMGB3P12-201ENST00000438745 ZNF219Q9P2Y4 722 aaPredicted RBP12.19□□□□□ -0.46
HMGB3P12-201ENST00000438745 ATXN8OSP0DMR3 200 aa12.18□□□□□ -0.46
HMGB3P12-201ENST00000438745 ATF5Q9Y2D1 282 aaPredicted RBP12.17□□□□□ -0.46
HMGB3P12-201ENST00000438745 POLA2Q14181 598 aa11.98□□□□□ -0.49
HMGB3P12-201ENST00000438745 POTEHQ6S545 545 aa11.81□□□□□ -0.52
HMGB3P12-201ENST00000438745 ZBTB12Q9Y330 459 aaPredicted RBP11.75□□□□□ -0.53
HMGB3P12-201ENST00000438745 RBM42Q9BTD8 480 aaKnown RBP11.68□□□□□ -0.54
HMGB3P12-201ENST00000438745 MKRN4PQ13434 485 aaPredicted RBP11.65□□□□□ -0.54
HMGB3P12-201ENST00000438745 FBLN2P98095 1184 aa11.61□□□□□ -0.55
HMGB3P12-201ENST00000438745 OSCARQ8IYS5 282 aa11.58□□□□□ -0.56
HMGB3P12-201ENST00000438745 CHRDL2Q6WN34 429 aa11.52□□□□□ -0.57
HMGB3P12-201ENST00000438745 AKT1S1Q96B36 256 aa11.47□□□□□ -0.57
HMGB3P12-201ENST00000438745 SPDYE2BA6NHP3 402 aa11.45□□□□□ -0.58
HMGB3P12-201ENST00000438745 SPDYE6P0CI01 402 aa11.45□□□□□ -0.58
HMGB3P12-201ENST00000438745 SPDYE2Q495Y8 402 aa11.45□□□□□ -0.58
HMGB3P12-201ENST00000438745 REM2Q8IYK8 340 aaPredicted RBP11.43□□□□□ -0.58
HMGB3P12-201ENST00000438745 SSUH2Q9Y2M2 353 aa11.36□□□□□ -0.59
HMGB3P12-201ENST00000438745 ZNF692Q9BU19 519 aaPredicted RBP11.34□□□□□ -0.59
HMGB3P12-201ENST00000438745 PITPNM1O00562 1244 aa11.33□□□□□ -0.6
HMGB3P12-201ENST00000438745 PIP4P2Q8N4L2 257 aa11.28□□□□□ -0.6
HMGB3P12-201ENST00000438745 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
HMGB3P12-201ENST00000438745 FXR2P51116 673 aaKnown RBP eCLIP11.19□□□□□ -0.62
HMGB3P12-201ENST00000438745 PABPN1Q86U42 306 aaKnown RBP eCLIP11.19□□□□□ -0.62
HMGB3P12-201ENST00000438745 PROM2Q8N271 834 aa11.14□□□□□ -0.63
HMGB3P12-201ENST00000438745 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P12-201ENST00000438745 CLEC11AQ9Y240 323 aa11.13□□□□□ -0.63
HMGB3P12-201ENST00000438745 HAX1O00165 279 aa11.07□□□□□ -0.64
HMGB3P12-201ENST00000438745 FKBP8Q14318 412 aa11.06□□□□□ -0.64
HMGB3P12-201ENST00000438745 SP7Q8TDD2 431 aaPredicted RBP11.06□□□□□ -0.64
HMGB3P12-201ENST00000438745 EVX2Q03828 476 aa11.05□□□□□ -0.64
HMGB3P12-201ENST00000438745 PRKAR2AP13861 404 aaKnown RBP11.02□□□□□ -0.65
HMGB3P12-201ENST00000438745 STAG3Q9UJ98 1225 aa10.99□□□□□ -0.65
HMGB3P12-201ENST00000438745 CHADLQ6NUI6 762 aa10.98□□□□□ -0.65
HMGB3P12-201ENST00000438745 PRR29P0C7W0 189 aa10.95□□□□□ -0.66
HMGB3P12-201ENST00000438745 C19orf67A6NJJ6 358 aa10.83□□□□□ -0.68
HMGB3P12-201ENST00000438745 CREBZFQ9NS37 354 aa10.82□□□□□ -0.68
HMGB3P12-201ENST00000438745 FBXO3Q9UK99 471 aa10.75□□□□□ -0.69
HMGB3P12-201ENST00000438745 FARP1Q9Y4F1 1045 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P12-201ENST00000438745 MNX1P50219 401 aaPredicted RBP10.72□□□□□ -0.69
HMGB3P12-201ENST00000438745 GABBR2O75899 941 aa10.7□□□□□ -0.7
HMGB3P12-201ENST00000438745 MIER1Q8N108 512 aa10.67□□□□□ -0.7
HMGB3P12-201ENST00000438745 CD44P16070 742 aaKnown RBP10.66□□□□□ -0.7
HMGB3P12-201ENST00000438745 VASPP50552 380 aaPredicted RBP10.6□□□□□ -0.71
HMGB3P12-201ENST00000438745 PLCD3Q8N3E9 789 aa10.6□□□□□ -0.71
HMGB3P12-201ENST00000438745 PLEKHG5O94827 1062 aa10.59□□□□□ -0.71
HMGB3P12-201ENST00000438745 NPM1P06748 294 aaKnown RBP eCLIP10.59□□□□□ -0.71
HMGB3P12-201ENST00000438745 POTEIP0CG38 1075 aa10.54□□□□□ -0.72
HMGB3P12-201ENST00000438745 ZBTB47Q9UFB7 747 aaPredicted RBP10.53□□□□□ -0.72
HMGB3P12-201ENST00000438745 ZRANB1Q9UGI0 708 aa10.52□□□□□ -0.73
HMGB3P12-201ENST00000438745 IFNLR1Q8IU57 520 aaPredicted RBP10.49□□□□□ -0.73
HMGB3P12-201ENST00000438745 NUBP1P53384 320 aa10.48□□□□□ -0.73
HMGB3P12-201ENST00000438745 ZNF579Q8NAF0 562 aaKnown RBP10.47□□□□□ -0.73
HMGB3P12-201ENST00000438745 RASEFQ8IZ41 740 aa10.44□□□□□ -0.74
HMGB3P12-201ENST00000438745 GALR2O43603 387 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P12-201ENST00000438745 PHF12Q96QT6 1004 aa10.43□□□□□ -0.74
HMGB3P12-201ENST00000438745 PAK3O75914 559 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms