RNA–Protein interactions for RNA: ENST00000428659.1

TIMM9P3-201, Transcript of TIMM9 pseudogene 3, humanhuman

BASIC

Gene TIMM9P3, Length 274 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMM9P3-201ENST00000428659 AEBP2Q6ZN18 517 aaPredicted RBP22.1■■□□□ 1.13
TIMM9P3-201ENST00000428659 CHIC1Q5VXU3 224 aa21.19■□□□□ 0.98
TIMM9P3-201ENST00000428659 PHF23Q9BUL5 403 aaPredicted RBP18.78■□□□□ 0.6
TIMM9P3-201ENST00000428659 SENP3Q9H4L4 574 aaPredicted RBP18.52■□□□□ 0.56
TIMM9P3-201ENST00000428659 FOXD1Q16676 465 aa17.41■□□□□ 0.38
TIMM9P3-201ENST00000428659 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
TIMM9P3-201ENST00000428659 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
TIMM9P3-201ENST00000428659 ADRA2BP18089 450 aa16.6■□□□□ 0.25
TIMM9P3-201ENST00000428659 PIAS4Q8N2W9 510 aaPredicted RBP16.25■□□□□ 0.19
TIMM9P3-201ENST00000428659 MSH5O43196 834 aa15.92■□□□□ 0.14
TIMM9P3-201ENST00000428659 MAPK8IP2Q13387 824 aaPredicted RBP15.19■□□□□ 0.02
TIMM9P3-201ENST00000428659 POTEDQ86YR6 584 aa15.09■□□□□ 0.01
TIMM9P3-201ENST00000428659 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
TIMM9P3-201ENST00000428659 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
TIMM9P3-201ENST00000428659 DMRT2Q9Y5R5 561 aa14.81□□□□□ -0.04
TIMM9P3-201ENST00000428659 CNKSR2Q8WXI2 1034 aa14.6□□□□□ -0.07
TIMM9P3-201ENST00000428659 KCNA4P22459 653 aa14.52□□□□□ -0.09
TIMM9P3-201ENST00000428659 HOXD11P31277 338 aaPredicted RBP14.42□□□□□ -0.1
TIMM9P3-201ENST00000428659 NPM3O75607 178 aaKnown RBP14.41□□□□□ -0.1
TIMM9P3-201ENST00000428659 NCBP3Q53F19 620 aaKnown RBP14.41□□□□□ -0.1
TIMM9P3-201ENST00000428659 RNF216Q9NWF9 866 aaPredicted RBP14.37□□□□□ -0.11
TIMM9P3-201ENST00000428659 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
TIMM9P3-201ENST00000428659 DNAJC5BQ9UF47 199 aa13.89□□□□□ -0.19
TIMM9P3-201ENST00000428659 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
TIMM9P3-201ENST00000428659 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
TIMM9P3-201ENST00000428659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.69□□□□□ -0.22
TIMM9P3-201ENST00000428659 SLC4A1APQ9BWU0 796 aaKnown RBP13.67□□□□□ -0.22
TIMM9P3-201ENST00000428659 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
TIMM9P3-201ENST00000428659 CACNB1Q02641 598 aaPredicted RBP13.51□□□□□ -0.25
TIMM9P3-201ENST00000428659 C1QBPQ07021 282 aaKnown RBP13.46□□□□□ -0.25
TIMM9P3-201ENST00000428659 ZBTB22O15209 634 aa13.45□□□□□ -0.26
TIMM9P3-201ENST00000428659 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
TIMM9P3-201ENST00000428659 FOXD4L1Q9NU39 408 aa13.29□□□□□ -0.28
TIMM9P3-201ENST00000428659 MYCNP04198 464 aaPredicted RBP13.18□□□□□ -0.3
TIMM9P3-201ENST00000428659 CAPN15O75808 1086 aa13.13□□□□□ -0.31
TIMM9P3-201ENST00000428659 CSRNP3Q8WYN3 585 aa13.11□□□□□ -0.31
TIMM9P3-201ENST00000428659 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
TIMM9P3-201ENST00000428659 EHMT2Q96KQ7 1210 aa13.1□□□□□ -0.31
TIMM9P3-201ENST00000428659 SAMD1Q6SPF0 538 aaPredicted RBP13.05□□□□□ -0.32
TIMM9P3-201ENST00000428659 TRHP20396 242 aaPredicted RBP13.04□□□□□ -0.32
TIMM9P3-201ENST00000428659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
TIMM9P3-201ENST00000428659 DSG3P32926 999 aa13.03□□□□□ -0.32
TIMM9P3-201ENST00000428659 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
TIMM9P3-201ENST00000428659 ABCB7O75027 752 aa12.95□□□□□ -0.34
TIMM9P3-201ENST00000428659 ZNF219Q9P2Y4 722 aaPredicted RBP12.89□□□□□ -0.35
TIMM9P3-201ENST00000428659 APLP2Q06481 763 aa12.88□□□□□ -0.35
TIMM9P3-201ENST00000428659 POLA2Q14181 598 aa12.79□□□□□ -0.36
TIMM9P3-201ENST00000428659 ATXN8OSP0DMR3 200 aa12.77□□□□□ -0.37
TIMM9P3-201ENST00000428659 MKRN4PQ13434 485 aaPredicted RBP12.49□□□□□ -0.41
TIMM9P3-201ENST00000428659 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
TIMM9P3-201ENST00000428659 ZBTB12Q9Y330 459 aaPredicted RBP12.33□□□□□ -0.44
TIMM9P3-201ENST00000428659 FBLN2P98095 1184 aa12.26□□□□□ -0.45
TIMM9P3-201ENST00000428659 RBM42Q9BTD8 480 aaKnown RBP12.2□□□□□ -0.46
TIMM9P3-201ENST00000428659 AKT1S1Q96B36 256 aa12.1□□□□□ -0.47
TIMM9P3-201ENST00000428659 SPDYE2BA6NHP3 402 aa12.09□□□□□ -0.47
TIMM9P3-201ENST00000428659 SPDYE6P0CI01 402 aa12.09□□□□□ -0.47
TIMM9P3-201ENST00000428659 SPDYE2Q495Y8 402 aa12.09□□□□□ -0.47
TIMM9P3-201ENST00000428659 REM2Q8IYK8 340 aaPredicted RBP12.08□□□□□ -0.48
TIMM9P3-201ENST00000428659 ZNF692Q9BU19 519 aaPredicted RBP12.06□□□□□ -0.48
TIMM9P3-201ENST00000428659 SSUH2Q9Y2M2 353 aa12.06□□□□□ -0.48
TIMM9P3-201ENST00000428659 PITPNM1O00562 1244 aa11.96□□□□□ -0.49
TIMM9P3-201ENST00000428659 SPDYE4A6NLX3 237 aa11.94□□□□□ -0.5
TIMM9P3-201ENST00000428659 CHRDL2Q6WN34 429 aa11.94□□□□□ -0.5
TIMM9P3-201ENST00000428659 PABPN1Q86U42 306 aaKnown RBP eCLIP11.94□□□□□ -0.5
TIMM9P3-201ENST00000428659 POTEHQ6S545 545 aa11.85□□□□□ -0.51
TIMM9P3-201ENST00000428659 CLEC11AQ9Y240 323 aa11.83□□□□□ -0.52
TIMM9P3-201ENST00000428659 PIP4P2Q8N4L2 257 aa11.79□□□□□ -0.52
TIMM9P3-201ENST00000428659 FKBP8Q14318 412 aa11.78□□□□□ -0.52
TIMM9P3-201ENST00000428659 SPDYE1Q8NFV5 336 aaPredicted RBP11.78□□□□□ -0.52
TIMM9P3-201ENST00000428659 FXR2P51116 673 aaKnown RBP eCLIP11.76□□□□□ -0.53
TIMM9P3-201ENST00000428659 PROM2Q8N271 834 aa11.76□□□□□ -0.53
TIMM9P3-201ENST00000428659 CHADLQ6NUI6 762 aa11.67□□□□□ -0.54
TIMM9P3-201ENST00000428659 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
TIMM9P3-201ENST00000428659 PRKAR2AP13861 404 aaKnown RBP11.62□□□□□ -0.55
TIMM9P3-201ENST00000428659 CREBZFQ9NS37 354 aa11.55□□□□□ -0.56
TIMM9P3-201ENST00000428659 EVX2Q03828 476 aa11.53□□□□□ -0.56
TIMM9P3-201ENST00000428659 STAG3Q9UJ98 1225 aa11.52□□□□□ -0.57
TIMM9P3-201ENST00000428659 MNX1P50219 401 aaPredicted RBP11.45□□□□□ -0.58
TIMM9P3-201ENST00000428659 FARP1Q9Y4F1 1045 aaPredicted RBP11.44□□□□□ -0.58
TIMM9P3-201ENST00000428659 HAX1O00165 279 aa11.41□□□□□ -0.58
TIMM9P3-201ENST00000428659 C19orf67A6NJJ6 358 aa11.37□□□□□ -0.59
TIMM9P3-201ENST00000428659 MIER1Q8N108 512 aa11.35□□□□□ -0.59
TIMM9P3-201ENST00000428659 CD44P16070 742 aaKnown RBP11.25□□□□□ -0.61
TIMM9P3-201ENST00000428659 PLCD3Q8N3E9 789 aa11.25□□□□□ -0.61
TIMM9P3-201ENST00000428659 SP7Q8TDD2 431 aaPredicted RBP11.25□□□□□ -0.61
TIMM9P3-201ENST00000428659 VASPP50552 380 aaPredicted RBP11.23□□□□□ -0.61
TIMM9P3-201ENST00000428659 FBXO3Q9UK99 471 aa11.23□□□□□ -0.61
TIMM9P3-201ENST00000428659 RASEFQ8IZ41 740 aa11.18□□□□□ -0.62
TIMM9P3-201ENST00000428659 IFNLR1Q8IU57 520 aaPredicted RBP11.17□□□□□ -0.62
TIMM9P3-201ENST00000428659 ZRANB1Q9UGI0 708 aa11.17□□□□□ -0.62
TIMM9P3-201ENST00000428659 NUBP1P53384 320 aa11.16□□□□□ -0.62
TIMM9P3-201ENST00000428659 NPM1P06748 294 aaKnown RBP eCLIP11.15□□□□□ -0.62
TIMM9P3-201ENST00000428659 GABBR2O75899 941 aa11.14□□□□□ -0.63
TIMM9P3-201ENST00000428659 PHF12Q96QT6 1004 aa11.13□□□□□ -0.63
TIMM9P3-201ENST00000428659 TSPYL2Q9H2G4 693 aaPredicted RBP11.13□□□□□ -0.63
TIMM9P3-201ENST00000428659 PLEKHG5O94827 1062 aa11.08□□□□□ -0.64
TIMM9P3-201ENST00000428659 ZNF579Q8NAF0 562 aaKnown RBP11.08□□□□□ -0.64
TIMM9P3-201ENST00000428659 CCDC61Q9Y6R9 512 aa11.06□□□□□ -0.64
TIMM9P3-201ENST00000428659 KLHL34Q8N239 644 aa11.05□□□□□ -0.64
TIMM9P3-201ENST00000428659 GALR2O43603 387 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms