Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC107934.1-201ENST00000522215 217 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC109635.3-201ENST00000529536 185 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AL157687.1-201ENST00000554853 619 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC025678.1-201ENST00000567861 338 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC060771.1-201ENST00000582031 164 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC007363.1-201ENST00000604736 620 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC017083.3-201ENST00000609955 700 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC012150.2-201ENST00000621300 544 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC079597.1-201ENST00000624306 508 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP4Q8N3C7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RNU6-989P-201ENST00000362756 107 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RNU6-483P-201ENST00000384088 108 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 Y_RNA.493-201ENST00000384422 102 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 U3.29-201ENST00000391296 212 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 USP9YP27-201ENST00000418455 438 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC119618.1-201ENST00000434191 222 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 UBE2V1P13-201ENST00000436983 439 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 SNORA71B-202ENST00000439232 272 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC108734.1-201ENST00000439549 399 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RPS29P31-201ENST00000446147 164 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC021382.1-201ENST00000483523 359 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 CEACAMP10-202ENST00000495431 496 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 COX7A2P2-201ENST00000505291 250 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RAC1P2-201ENST00000511164 579 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RNA5SP208-201ENST00000516156 78 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RN7SKP83-201ENST00000516512 178 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 Y_RNA.693-201ENST00000516641 110 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 RNU4-60P-201ENST00000517239 135 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 IGKV2-23-201ENST00000518729 323 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 SUMO2P20-201ENST00000520803 283 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 MTND1P35-201ENST00000526739 508 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 SETP2-201ENST00000553886 926 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 MIR3167-201ENST00000579623 85 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 UBE2L4-201ENST00000587688 464 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC011451.2-201ENST00000604303 598 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC004853.1-201ENST00000604902 698 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC092794.2-201ENST00000620933 563 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC079684.1-201ENST00000621405 437 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 MIR6500-201ENST00000622700 86 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AL158801.5-201ENST00000623123 465 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 AC139792.3-201ENST00000623525 224 ntBASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
CLIP4Q8N3C7 ZNF826P-207ENST00000622273 1910 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 RNU4-1-201ENST00000363925 141 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 RNY4P16-201ENST00000364768 94 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 Y_RNA.295-201ENST00000364918 102 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 RNU6-359P-201ENST00000365466 108 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 SNORA20.2-201ENST00000383922 131 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 MT-TC-201ENST00000387405 66 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 U3.20-201ENST00000390909 217 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 RPS3AP24-201ENST00000407896 734 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 RNA5SP56-201ENST00000410277 118 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 AL139413.1-201ENST00000421309 217 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 AC006548.1-201ENST00000427470 102 ntBASIC3.52□□□□□ -1.85
CLIP4Q8N3C7 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms