Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.8□□□□□ -1.64
RNF4P78317 RNU6-190P-201ENST00000384154 102 ntBASIC4.8□□□□□ -1.64
RNF4P78317 CYB5AP4-201ENST00000396692 399 ntBASIC4.8□□□□□ -1.64
RNF4P78317 GLULP6-201ENST00000399502 913 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RPL23AP27-201ENST00000415161 451 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RPLP0P7-201ENST00000416050 667 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AL590632.1-201ENST00000424289 371 ntBASIC4.8□□□□□ -1.64
RNF4P78317 FABP7P2-201ENST00000429946 379 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.8□□□□□ -1.64
RNF4P78317 RPS20P1-201ENST00000434853 354 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.8□□□□□ -1.64
RNF4P78317 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.8□□□□□ -1.64
RNF4P78317 PTMAP3-201ENST00000447474 330 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC092647.2-201ENST00000452998 253 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC108161.1-201ENST00000461060 402 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC117503.1-201ENST00000472241 394 ntBASIC4.8□□□□□ -1.64
RNF4P78317 TRBV1-201ENST00000476502 284 ntBASIC4.8□□□□□ -1.64
RNF4P78317 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.8□□□□□ -1.64
RNF4P78317 AL135752.1-201ENST00000479477 471 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RPSAP50-201ENST00000481955 852 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC010350.1-201ENST00000504908 231 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RNU6-976P-201ENST00000516086 111 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RNU6-1332P-201ENST00000516666 104 ntBASIC4.8□□□□□ -1.64
RNF4P78317 RNU6-1016P-201ENST00000516689 94 ntBASIC4.8□□□□□ -1.64
RNF4P78317 HMGN2P6-201ENST00000551091 273 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.8□□□□□ -1.64
RNF4P78317 MIR4680-201ENST00000580906 66 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC006116.3-201ENST00000592968 361 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.8□□□□□ -1.64
RNF4P78317 AC007619.2-201ENST00000605743 379 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC211433.2-201ENST00000608433 387 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AC083806.3-201ENST00000614016 455 ntBASIC4.8□□□□□ -1.64
RNF4P78317 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 AC098657.3-201ENST00000620434 263 ntBASIC4.8□□□□□ -1.64
RNF4P78317 AP001642.1-201ENST00000624727 2117 ntBASIC4.8□□□□□ -1.64
RNF4P78317 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.8□□□□□ -1.64
RNF4P78317 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.8□□□□□ -1.64
RNF4P78317 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
RNF4P78317 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
RNF4P78317 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 AC092376.2-201ENST00000622621 4116 ntBASIC4.8□□□□□ -1.64
RNF4P78317 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 SCARNA15-201ENST00000607520 4325 ntBASIC4.8□□□□□ -1.64
RNF4P78317 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.79□□□□□ -1.64
RNF4P78317 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.79□□□□□ -1.64
RNF4P78317 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
RNF4P78317 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 Y_RNA.5-201ENST00000362334 102 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNU6-1115P-201ENST00000362490 106 ntBASIC4.79□□□□□ -1.64
RNF4P78317 SNORA23-201ENST00000365128 182 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNA5SP223-201ENST00000365174 120 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNU6-1040P-201ENST00000383974 107 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNU6-890P-201ENST00000384121 107 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNU1-106P-201ENST00000384382 164 ntBASIC4.79□□□□□ -1.64
RNF4P78317 SNORA70-201ENST00000384436 135 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RNU6-393P-201ENST00000384475 107 ntBASIC4.79□□□□□ -1.64
RNF4P78317 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
RNF4P78317 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
RNF4P78317 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 AL445189.1-201ENST00000405722 338 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RN7SKP213-201ENST00000410746 298 ntBASIC4.79□□□□□ -1.64
RNF4P78317 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.79□□□□□ -1.64
RNF4P78317 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.79□□□□□ -1.64
RNF4P78317 E2F6P2-201ENST00000420708 748 ntBASIC4.79□□□□□ -1.64
RNF4P78317 FAR2P4-202ENST00000425399 584 ntBASIC4.79□□□□□ -1.64
RNF4P78317 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.79□□□□□ -1.64
RNF4P78317 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 MRPS18BP2-201ENST00000434310 759 ntBASIC4.79□□□□□ -1.64
RNF4P78317 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.79□□□□□ -1.64
RNF4P78317 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.79□□□□□ -1.64
RNF4P78317 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 AL035666.1-201ENST00000446195 348 ntBASIC4.79□□□□□ -1.64
RNF4P78317 AC097484.1-201ENST00000471148 389 ntBASIC4.79□□□□□ -1.64
RNF4P78317 BX284632.1-201ENST00000478218 541 ntBASIC4.79□□□□□ -1.64
RNF4P78317 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.79□□□□□ -1.64
RNF4P78317 AC079140.5-201ENST00000507882 310 ntBASIC4.79□□□□□ -1.64
RNF4P78317 Y_RNA.689-201ENST00000516589 107 ntBASIC4.79□□□□□ -1.64
RNF4P78317 RN7SKP66-201ENST00000516681 231 ntBASIC4.79□□□□□ -1.64
RNF4P78317 COX6CP5-201ENST00000527162 228 ntBASIC4.79□□□□□ -1.64
RNF4P78317 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 AC022882.1-201ENST00000532142 501 ntBASIC4.79□□□□□ -1.64
RNF4P78317 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.79□□□□□ -1.64
RNF4P78317 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.79□□□□□ -1.64
RNF4P78317 AC092490.3-201ENST00000545370 572 ntBASIC4.79□□□□□ -1.64
RNF4P78317 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.79□□□□□ -1.64
RNF4P78317 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 AC044860.2-201ENST00000561005 179 ntBASIC4.79□□□□□ -1.64
RNF4P78317 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.79□□□□□ -1.64
RNF4P78317 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms