RNA–Protein interactions for RNA: ENST00000383974.1

RNU6-1040P-201, Transcript of RNA, U6 small nuclear 1040, pseudogene, humanhuman

BASIC

Gene RNU6-1040P, Length 107 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1040P-201ENST00000383974 AEBP2Q6ZN18 517 aaPredicted RBP19.27■□□□□ 0.68
RNU6-1040P-201ENST00000383974 CHIC1Q5VXU3 224 aa18.37■□□□□ 0.53
RNU6-1040P-201ENST00000383974 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
RNU6-1040P-201ENST00000383974 PHF23Q9BUL5 403 aaPredicted RBP16.19■□□□□ 0.18
RNU6-1040P-201ENST00000383974 FOXD1Q16676 465 aa15.29■□□□□ 0.04
RNU6-1040P-201ENST00000383974 PLPPR3Q6T4P5 718 aa14.71□□□□□ -0.05
RNU6-1040P-201ENST00000383974 PPP6R1Q9UPN7 881 aa14.36□□□□□ -0.11
RNU6-1040P-201ENST00000383974 ADRA2BP18089 450 aa14.32□□□□□ -0.12
RNU6-1040P-201ENST00000383974 PIAS4Q8N2W9 510 aaPredicted RBP14.32□□□□□ -0.12
RNU6-1040P-201ENST00000383974 MSH5O43196 834 aa14.25□□□□□ -0.13
RNU6-1040P-201ENST00000383974 POTEDQ86YR6 584 aa13.77□□□□□ -0.21
RNU6-1040P-201ENST00000383974 MAPK8IP2Q13387 824 aaPredicted RBP13.12□□□□□ -0.31
RNU6-1040P-201ENST00000383974 SCAF1Q9H7N4 1312 aaKnown RBP13.08□□□□□ -0.32
RNU6-1040P-201ENST00000383974 DMRT2Q9Y5R5 561 aa13.02□□□□□ -0.33
RNU6-1040P-201ENST00000383974 PPP4R3CPQ6ZMV5 832 aa12.92□□□□□ -0.34
RNU6-1040P-201ENST00000383974 CNKSR2Q8WXI2 1034 aa12.64□□□□□ -0.39
RNU6-1040P-201ENST00000383974 HOXD11P31277 338 aaPredicted RBP12.58□□□□□ -0.4
RNU6-1040P-201ENST00000383974 RNF216Q9NWF9 866 aaPredicted RBP12.5□□□□□ -0.41
RNU6-1040P-201ENST00000383974 DCAF8L1A6NGE4 600 aa12.49□□□□□ -0.41
RNU6-1040P-201ENST00000383974 NCBP3Q53F19 620 aaKnown RBP12.42□□□□□ -0.42
RNU6-1040P-201ENST00000383974 NPM3O75607 178 aaKnown RBP12.28□□□□□ -0.44
RNU6-1040P-201ENST00000383974 RNF39Q9H2S5 420 aa12.18□□□□□ -0.46
RNU6-1040P-201ENST00000383974 CACNB1Q02641 598 aaPredicted RBP12.17□□□□□ -0.46
RNU6-1040P-201ENST00000383974 KCNA4P22459 653 aa12.14□□□□□ -0.47
RNU6-1040P-201ENST00000383974 DNAJC5BQ9UF47 199 aa12.1□□□□□ -0.47
RNU6-1040P-201ENST00000383974 C1QBPQ07021 282 aaKnown RBP11.99□□□□□ -0.49
RNU6-1040P-201ENST00000383974 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.98□□□□□ -0.49
RNU6-1040P-201ENST00000383974 U3KPZ7 1027 aaPredicted RBP11.76□□□□□ -0.53
RNU6-1040P-201ENST00000383974 SLC4A2P04920 1241 aa11.7□□□□□ -0.54
RNU6-1040P-201ENST00000383974 SPINK5Q9NQ38 1064 aaPredicted RBP11.57□□□□□ -0.56
RNU6-1040P-201ENST00000383974 CAPN15O75808 1086 aa11.52□□□□□ -0.57
RNU6-1040P-201ENST00000383974 SLC4A1APQ9BWU0 796 aaKnown RBP11.46□□□□□ -0.57
RNU6-1040P-201ENST00000383974 DSG3P32926 999 aa11.43□□□□□ -0.58
RNU6-1040P-201ENST00000383974 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.42□□□□□ -0.58
RNU6-1040P-201ENST00000383974 HNRNPUL2Q1KMD3 747 aaKnown RBP11.42□□□□□ -0.58
RNU6-1040P-201ENST00000383974 APLP2Q06481 763 aa11.4□□□□□ -0.58
RNU6-1040P-201ENST00000383974 TRHP20396 242 aaPredicted RBP11.37□□□□□ -0.59
RNU6-1040P-201ENST00000383974 SAMD1Q6SPF0 538 aaPredicted RBP11.37□□□□□ -0.59
RNU6-1040P-201ENST00000383974 MYCNP04198 464 aaPredicted RBP11.35□□□□□ -0.59
RNU6-1040P-201ENST00000383974 ZNF219Q9P2Y4 722 aaPredicted RBP11.34□□□□□ -0.59
RNU6-1040P-201ENST00000383974 ABCB7O75027 752 aa11.29□□□□□ -0.6
RNU6-1040P-201ENST00000383974 FOXD4L1Q9NU39 408 aa11.28□□□□□ -0.6
RNU6-1040P-201ENST00000383974 ZBTB22O15209 634 aa11.18□□□□□ -0.62
RNU6-1040P-201ENST00000383974 ATF5Q9Y2D1 282 aaPredicted RBP11.1□□□□□ -0.63
RNU6-1040P-201ENST00000383974 POLA2Q14181 598 aa11.08□□□□□ -0.64
RNU6-1040P-201ENST00000383974 ATXN8OSP0DMR3 200 aa10.9□□□□□ -0.66
RNU6-1040P-201ENST00000383974 RBM42Q9BTD8 480 aaKnown RBP10.9□□□□□ -0.66
RNU6-1040P-201ENST00000383974 ZBTB12Q9Y330 459 aaPredicted RBP10.85□□□□□ -0.67
RNU6-1040P-201ENST00000383974 POTEHQ6S545 545 aa10.8□□□□□ -0.68
RNU6-1040P-201ENST00000383974 OSCARQ8IYS5 282 aa10.75□□□□□ -0.69
RNU6-1040P-201ENST00000383974 CSRNP3Q8WYN3 585 aa10.72□□□□□ -0.69
RNU6-1040P-201ENST00000383974 AKT1S1Q96B36 256 aa10.66□□□□□ -0.7
RNU6-1040P-201ENST00000383974 EHMT2Q96KQ7 1210 aa10.66□□□□□ -0.7
RNU6-1040P-201ENST00000383974 CHRDL2Q6WN34 429 aa10.64□□□□□ -0.71
RNU6-1040P-201ENST00000383974 FBLN2P98095 1184 aa10.63□□□□□ -0.71
RNU6-1040P-201ENST00000383974 MKRN4PQ13434 485 aaPredicted RBP10.59□□□□□ -0.71
RNU6-1040P-201ENST00000383974 REM2Q8IYK8 340 aaPredicted RBP10.57□□□□□ -0.72
RNU6-1040P-201ENST00000383974 SPDYE2BA6NHP3 402 aa10.52□□□□□ -0.73
RNU6-1040P-201ENST00000383974 SPDYE6P0CI01 402 aa10.52□□□□□ -0.73
RNU6-1040P-201ENST00000383974 SPDYE2Q495Y8 402 aa10.52□□□□□ -0.73
RNU6-1040P-201ENST00000383974 PITPNM1O00562 1244 aa10.48□□□□□ -0.73
RNU6-1040P-201ENST00000383974 ZNF692Q9BU19 519 aaPredicted RBP10.41□□□□□ -0.74
RNU6-1040P-201ENST00000383974 SSUH2Q9Y2M2 353 aa10.41□□□□□ -0.74
RNU6-1040P-201ENST00000383974 PIP4P2Q8N4L2 257 aa10.4□□□□□ -0.74
RNU6-1040P-201ENST00000383974 FXR2P51116 673 aaKnown RBP eCLIP10.35□□□□□ -0.75
RNU6-1040P-201ENST00000383974 SPDYE1Q8NFV5 336 aaPredicted RBP10.32□□□□□ -0.76
RNU6-1040P-201ENST00000383974 CLEC11AQ9Y240 323 aa10.31□□□□□ -0.76
RNU6-1040P-201ENST00000383974 PABPN1Q86U42 306 aaKnown RBP eCLIP10.28□□□□□ -0.76
RNU6-1040P-201ENST00000383974 PRKAR2AP13861 404 aaKnown RBP10.2□□□□□ -0.78
RNU6-1040P-201ENST00000383974 HAX1O00165 279 aa10.18□□□□□ -0.78
RNU6-1040P-201ENST00000383974 SP7Q8TDD2 431 aaPredicted RBP10.17□□□□□ -0.78
RNU6-1040P-201ENST00000383974 PRR29P0C7W0 189 aa10.13□□□□□ -0.79
RNU6-1040P-201ENST00000383974 SPDYE4A6NLX3 237 aa10.12□□□□□ -0.79
RNU6-1040P-201ENST00000383974 CHADLQ6NUI6 762 aa10.12□□□□□ -0.79
RNU6-1040P-201ENST00000383974 EVX2Q03828 476 aa10.08□□□□□ -0.8
RNU6-1040P-201ENST00000383974 C19orf67A6NJJ6 358 aa10.01□□□□□ -0.81
RNU6-1040P-201ENST00000383974 STAG3Q9UJ98 1225 aa9.98□□□□□ -0.81
RNU6-1040P-201ENST00000383974 FARP1Q9Y4F1 1045 aaPredicted RBP9.95□□□□□ -0.82
RNU6-1040P-201ENST00000383974 CREBZFQ9NS37 354 aa9.92□□□□□ -0.82
RNU6-1040P-201ENST00000383974 PROM2Q8N271 834 aa9.9□□□□□ -0.82
RNU6-1040P-201ENST00000383974 CD44P16070 742 aaKnown RBP9.89□□□□□ -0.83
RNU6-1040P-201ENST00000383974 GABBR2O75899 941 aa9.84□□□□□ -0.83
RNU6-1040P-201ENST00000383974 MNX1P50219 401 aaPredicted RBP9.78□□□□□ -0.84
RNU6-1040P-201ENST00000383974 ZRANB1Q9UGI0 708 aa9.75□□□□□ -0.85
RNU6-1040P-201ENST00000383974 ZNF579Q8NAF0 562 aaKnown RBP9.74□□□□□ -0.85
RNU6-1040P-201ENST00000383974 FKBP8Q14318 412 aa9.73□□□□□ -0.85
RNU6-1040P-201ENST00000383974 NPM1P06748 294 aaKnown RBP eCLIP9.72□□□□□ -0.85
RNU6-1040P-201ENST00000383974 PAK3O75914 559 aaPredicted RBP9.69□□□□□ -0.86
RNU6-1040P-201ENST00000383974 CLCN6P51797 869 aa9.68□□□□□ -0.86
RNU6-1040P-201ENST00000383974 POTEIP0CG38 1075 aa9.65□□□□□ -0.86
RNU6-1040P-201ENST00000383974 PHF12Q96QT6 1004 aa9.65□□□□□ -0.86
RNU6-1040P-201ENST00000383974 MIER1Q8N108 512 aa9.63□□□□□ -0.87
RNU6-1040P-201ENST00000383974 GALR2O43603 387 aaPredicted RBP9.62□□□□□ -0.87
RNU6-1040P-201ENST00000383974 PLEKHG5O94827 1062 aa9.61□□□□□ -0.87
RNU6-1040P-201ENST00000383974 DCBLD2Q96PD2 775 aa9.59□□□□□ -0.87
RNU6-1040P-201ENST00000383974 PLCD3Q8N3E9 789 aa9.58□□□□□ -0.88
RNU6-1040P-201ENST00000383974 TSPYL2Q9H2G4 693 aaPredicted RBP9.57□□□□□ -0.88
RNU6-1040P-201ENST00000383974 LHX8Q68G74 356 aa9.53□□□□□ -0.88
RNU6-1040P-201ENST00000383974 CCDC61Q9Y6R9 512 aa9.53□□□□□ -0.88
RNU6-1040P-201ENST00000383974 RASEFQ8IZ41 740 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms