Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.02■□□□□ 0.79
PCDHA3Q9Y5H8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AC104771.1-201ENST00000603335 964 ntBASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHA3Q9Y5H8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 F2R-202ENST00000505600 442 ntTSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 AC007613.1-201ENST00000572811 2597 ntBASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHA3Q9Y5H8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 UNC93B5-201ENST00000530315 699 ntBASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 AC005082.1-201ENST00000413042 2259 ntBASIC19.99■□□□□ 0.79
PCDHA3Q9Y5H8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 TSPY21P-201ENST00000433481 731 ntBASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms