Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 RASA4DP-201ENST00000460726 1199 ntBASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 AL121672.3-201ENST00000608644 468 ntBASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
PCDHGA1Q9Y5H4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 TSSC2-201ENST00000450217 709 ntBASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 CR769767.2-201ENST00000622735 460 ntBASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDHGA1Q9Y5H4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 FDX1P1-201ENST00000449115 551 ntBASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 MIR4674-201ENST00000582457 87 ntBASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA1Q9Y5H4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 AC246785.2-201ENST00000432512 513 ntBASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 BX276092.5-203ENST00000456199 560 ntBASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 AC011498.5-201ENST00000592027 486 ntBASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA1Q9Y5H4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 KRT17P6-201ENST00000453795 1220 ntBASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms