Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 Z85996.1-201ENST00000494644 937 ntBASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 AL023803.3-201ENST00000615559 522 ntBASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA9Q9Y5G4 KRT8P8-201ENST00000434750 1448 ntBASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHGA9Q9Y5G4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 CA15P1-201ENST00000481698 905 ntBASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 AC141257.4-201ENST00000634557 245 ntBASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 AC136944.6-201ENST00000634818 245 ntBASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 AP000550.4-202ENST00000639755 178 ntBASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHGA9Q9Y5G4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 BX323043.1-201ENST00000641006 1765 ntBASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHGA9Q9Y5G4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDHGA9Q9Y5G4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms