Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TFP1-202ENST00000475455 1573 ntBASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 FAM197Y1-201ENST00000421178 764 ntBASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 AL032819.2-201ENST00000624543 2162 ntBASIC18.74■□□□□ 0.59
PCDHB3Q9Y5E6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 AC018553.1-201ENST00000616682 1458 ntBASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 NIFKP9-201ENST00000419265 221 ntBASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 KSR1P1-201ENST00000446298 240 ntBASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHB3Q9Y5E6 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 PHGDH-210ENST00000641115 1638 ntBASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 YBX1P10-201ENST00000444752 975 ntBASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 AC012306.2-201ENST00000609350 630 ntBASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDHB3Q9Y5E6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PCDHB3Q9Y5E6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms