Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC36.4■■■■□ 3.42
SHROOM4Q9ULL8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC36.4■■■■□ 3.42
SHROOM4Q9ULL8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 AL845331.1-201ENST00000424978 1190 ntBASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 NME1-207ENST00000480143 964 ntTSL 2 BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 CKBP1-201ENST00000565489 1086 ntBASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC36.39■■■■□ 3.42
SHROOM4Q9ULL8 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC36.38■■■■□ 3.42
SHROOM4Q9ULL8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 AC009078.2-202ENST00000463353 338 ntBASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 UNC93B7-201ENST00000509439 705 ntBASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 AC104692.2-201ENST00000603054 253 ntBASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC36.38■■■■□ 3.41
SHROOM4Q9ULL8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC36.37■■■■□ 3.41
SHROOM4Q9ULL8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SHROOM4Q9ULL8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
SHROOM4Q9ULL8 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 AC092329.2-201ENST00000598402 547 ntBASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 AL671883.3-201ENST00000603274 991 ntBASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC36.34■■■■□ 3.41
SHROOM4Q9ULL8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 GCSHP2-201ENST00000560971 527 ntBASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
SHROOM4Q9ULL8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC36.32■■■■□ 3.41
SHROOM4Q9ULL8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC36.32■■■■□ 3.4
SHROOM4Q9ULL8 LBX2-AS1-202ENST00000603175 2083 ntBASIC36.32■■■■□ 3.4
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms