Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 AC116562.4-201ENST00000641316 2276 ntBASIC19.7■□□□□ 0.74
VPS28Q9UK41 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS28Q9UK41 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS28Q9UK41 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 CRYGFP-201ENST00000418459 633 ntBASIC19.69■□□□□ 0.74
VPS28Q9UK41 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 AP000692.2-201ENST00000608391 879 ntBASIC19.69■□□□□ 0.74
VPS28Q9UK41 AC133561.5-201ENST00000635547 218 ntBASIC19.69■□□□□ 0.74
VPS28Q9UK41 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS28Q9UK41 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VPS28Q9UK41 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 KRT8P41-201ENST00000533985 1514 ntBASIC19.68■□□□□ 0.74
VPS28Q9UK41 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 ECEL1P3-201ENST00000427961 737 ntBASIC19.68■□□□□ 0.74
VPS28Q9UK41 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS28Q9UK41 AC098818.2-201ENST00000564925 2320 ntBASIC19.68■□□□□ 0.74
VPS28Q9UK41 KRT8P9-201ENST00000558927 1449 ntBASIC19.68■□□□□ 0.74
VPS28Q9UK41 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS28Q9UK41 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS28Q9UK41 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS28Q9UK41 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms