Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCF1Q9UBD9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CLCF1Q9UBD9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AC125437.2-201ENST00000625180 2167 ntBASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AL049597.2-201ENST00000565575 961 ntBASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AC006011.2-201ENST00000621313 1158 ntBASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.02■□□□□ 0.32
CLCF1Q9UBD9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.02■□□□□ 0.31
CLCF1Q9UBD9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 AP003041.3-201ENST00000527151 707 ntBASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 AL138966.2-201ENST00000621997 464 ntBASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLCF1Q9UBD9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLCF1Q9UBD9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CLCF1Q9UBD9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms