Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 LINC00896-202ENST00000609602 2128 ntBASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCX3AQ9NNX9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 SRD5A1P1-201ENST00000442297 786 ntBASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
VCX3AQ9NNX9 AC008764.6-201ENST00000595909 2069 ntBASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 AC073592.3-201ENST00000625118 1834 ntBASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 AC018695.7-201ENST00000624587 2492 ntBASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCX3AQ9NNX9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCX3AQ9NNX9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCX3AQ9NNX9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms