Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 BICD1-207ENST00000551848 1962 ntBASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 AL138781.1-201ENST00000566567 1274 ntBASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AC141586.3-201ENST00000562166 1838 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AC069152.1-201ENST00000438030 544 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 GUSBP6-202ENST00000438529 1198 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 KRT18P6-201ENST00000555540 1265 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AP000997.3-201ENST00000623333 2250 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 NOC2LP1-202ENST00000452600 2235 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AL031598.1-201ENST00000561511 1773 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 AC020916.1-201ENST00000587762 1774 ntBASIC17.71■□□□□ 0.43
ZNF540Q8NDQ6 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
ZNF540Q8NDQ6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.71■□□□□ 0.42
ZNF540Q8NDQ6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
ZNF540Q8NDQ6 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
ZNF540Q8NDQ6 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
ZNF540Q8NDQ6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 AL354751.1-201ENST00000412768 1863 ntBASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 TMEM191A-211ENST00000637163 1067 ntBASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 NOC2LP2-201ENST00000407594 1944 ntBASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF540Q8NDQ6 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 Z98044.1-201ENST00000632503 1764 ntBASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 ABHD17AP1-201ENST00000358206 933 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms