Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AC133637.1-201ENST00000624115 1537 ntBASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 KRT8P33-201ENST00000508125 1423 ntBASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AC103834.1-201ENST00000520383 144 ntBASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MIR6722-201ENST00000617286 78 ntBASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 AL031848.2-201ENST00000607670 837 ntBASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLRN3Q8NCR9 AC022211.2-201ENST00000585075 2527 ntBASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 AC103724.3-201ENST00000564481 992 ntBASIC15.27■□□□□ 0.04
CLRN3Q8NCR9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.27■□□□□ 0.03
CLRN3Q8NCR9 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 AC108860.2-201ENST00000562760 2183 ntBASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms