Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTL3Q8N8U3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.66■□□□□ 0.74
RTL3Q8N8U3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
RTL3Q8N8U3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTL3Q8N8U3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RTL3Q8N8U3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 RBM17P1-201ENST00000453646 1190 ntBASIC19.65■□□□□ 0.74
RTL3Q8N8U3 PRSS44-201ENST00000515154 1146 ntBASIC19.65■□□□□ 0.74
RTL3Q8N8U3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 AL355075.4-201ENST00000554988 638 ntBASIC19.65■□□□□ 0.74
RTL3Q8N8U3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.65■□□□□ 0.74
RTL3Q8N8U3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.65■□□□□ 0.74
RTL3Q8N8U3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RTL3Q8N8U3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RTL3Q8N8U3 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.64■□□□□ 0.74
RTL3Q8N8U3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RTL3Q8N8U3 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.64■□□□□ 0.74
RTL3Q8N8U3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
RTL3Q8N8U3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 IRX1P1-201ENST00000438849 1838 ntBASIC19.63■□□□□ 0.73
RTL3Q8N8U3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 UNC93B2-201ENST00000285383 730 ntBASIC19.63■□□□□ 0.73
RTL3Q8N8U3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RTL3Q8N8U3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 AC096733.2-201ENST00000609937 1394 ntBASIC19.62■□□□□ 0.73
RTL3Q8N8U3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.62■□□□□ 0.73
RTL3Q8N8U3 CKBP1-201ENST00000565489 1086 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms