Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AL049812.1-201ENST00000432563 2267 ntBASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AP006587.1-201ENST00000534129 1502 ntBASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP4Q8N3C7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 AL121906.2-201ENST00000621597 723 ntBASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLIP4Q8N3C7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 ZNF815P-204ENST00000434898 1737 ntBASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 AC008687.6-201ENST00000596318 630 ntBASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP4Q8N3C7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CLIP4Q8N3C7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
CLIP4Q8N3C7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLIP4Q8N3C7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 AL133373.2-201ENST00000623187 2828 ntBASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP4Q8N3C7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms