Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 AL023284.2-201ENST00000405850 579 ntBASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 KRT17P6-201ENST00000453795 1220 ntBASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 AP002414.4-201ENST00000589764 1148 ntBASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 AC073314.1-201ENST00000568729 2216 ntBASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CNKSR3Q6P9H4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 AL162741.1-201ENST00000565563 1558 ntBASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 AC093525.10-201ENST00000625130 1569 ntBASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 NUS1P1-201ENST00000446295 882 ntBASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 UNC93B7-201ENST00000509439 705 ntBASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 MIR3180-5-201ENST00000583743 153 ntBASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CNKSR3Q6P9H4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 KRT8P10-201ENST00000450021 1447 ntBASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CNKSR3Q6P9H4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 CHCHD2P8-201ENST00000429873 447 ntBASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 MCCD1P1-208ENST00000445732 328 ntBASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 SEC1P-202ENST00000473944 940 ntBASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 AC079602.3-201ENST00000623931 403 ntBASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CNKSR3Q6P9H4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CNKSR3Q6P9H4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms