Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC58Q4VC31 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 DUX4L16-201ENST00000555130 1264 ntBASIC17.09■□□□□ 0.33
CCDC58Q4VC31 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 TFP1-202ENST00000475455 1573 ntBASIC17.09■□□□□ 0.33
CCDC58Q4VC31 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 Z98044.1-201ENST00000632503 1764 ntBASIC17.09■□□□□ 0.33
CCDC58Q4VC31 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC58Q4VC31 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC58Q4VC31 AL031598.1-201ENST00000561511 1773 ntBASIC17.08■□□□□ 0.33
CCDC58Q4VC31 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AC034268.1-201ENST00000441047 882 ntBASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AC137761.2-201ENST00000561729 223 ntBASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AC145350.3-201ENST00000569033 163 ntBASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AC008894.3-201ENST00000624324 3103 ntBASIC17.08■□□□□ 0.32
CCDC58Q4VC31 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AL390961.4-201ENST00000623958 2535 ntBASIC17.08■□□□□ 0.32
CCDC58Q4VC31 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC58Q4VC31 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 AL355472.2-201ENST00000422958 438 ntBASIC17.07■□□□□ 0.32
CCDC58Q4VC31 CYP2T1P-201ENST00000432607 1285 ntBASIC17.07■□□□□ 0.32
CCDC58Q4VC31 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 OR10C1-204ENST00000622521 1039 ntBASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms