Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC40Q4G0X9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC40Q4G0X9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 AC093503.3-201ENST00000624917 2352 ntBASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 ESRRAP1-201ENST00000400596 1257 ntBASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC40Q4G0X9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 AL023875.1-201ENST00000640777 796 ntBASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC40Q4G0X9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 AC239809.2-201ENST00000415381 517 ntBASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 C1QL1P1-201ENST00000568105 661 ntBASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms