Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 TPM4P1-201ENST00000436100 807 ntBASIC16.83■□□□□ 0.28
TFF3Q07654 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.83■□□□□ 0.28
TFF3Q07654 HCG4P8-203ENST00000443049 980 ntBASIC16.83■□□□□ 0.28
TFF3Q07654 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.83■□□□□ 0.28
TFF3Q07654 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.83■□□□□ 0.28
TFF3Q07654 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TFF3Q07654 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.83■□□□□ 0.28
TFF3Q07654 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.83■□□□□ 0.28
TFF3Q07654 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TFF3Q07654 AC069148.1-201ENST00000608741 768 ntBASIC16.83■□□□□ 0.28
TFF3Q07654 AC083849.1-201ENST00000615227 514 ntBASIC16.83■□□□□ 0.28
TFF3Q07654 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TFF3Q07654 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TFF3Q07654 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.82■□□□□ 0.28
TFF3Q07654 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 AP000523.1-201ENST00000398242 1049 ntBASIC16.82■□□□□ 0.28
TFF3Q07654 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 NEK4P2-201ENST00000580004 1012 ntBASIC16.82■□□□□ 0.28
TFF3Q07654 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.82■□□□□ 0.28
TFF3Q07654 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
TFF3Q07654 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 HYMAI.1-201ENST00000620949 238 ntBASIC16.82■□□□□ 0.28
TFF3Q07654 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
TFF3Q07654 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TFF3Q07654 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TFF3Q07654 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TFF3Q07654 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TFF3Q07654 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TFF3Q07654 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TFF3Q07654 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TFF3Q07654 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.81■□□□□ 0.28
TFF3Q07654 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TFF3Q07654 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TFF3Q07654 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.81■□□□□ 0.28
TFF3Q07654 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.81■□□□□ 0.28
TFF3Q07654 AC112907.2-201ENST00000448639 330 ntBASIC16.81■□□□□ 0.28
TFF3Q07654 VENTXP5-201ENST00000523979 775 ntBASIC16.81■□□□□ 0.28
TFF3Q07654 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.81■□□□□ 0.28
TFF3Q07654 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TFF3Q07654 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.81■□□□□ 0.28
TFF3Q07654 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.8■□□□□ 0.28
TFF3Q07654 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
TFF3Q07654 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.8■□□□□ 0.28
TFF3Q07654 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 STARP1-201ENST00000397973 869 ntBASIC16.8■□□□□ 0.28
TFF3Q07654 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.8■□□□□ 0.28
TFF3Q07654 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
TFF3Q07654 CLEC4GP1-201ENST00000596555 870 ntBASIC16.8■□□□□ 0.28
TFF3Q07654 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.8■□□□□ 0.28
TFF3Q07654 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.8■□□□□ 0.28
TFF3Q07654 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.8■□□□□ 0.28
TFF3Q07654 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TFF3Q07654 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TFF3Q07654 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.8■□□□□ 0.28
TFF3Q07654 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms