Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 NSUN5P1-202ENST00000421140 1535 ntBASIC11.88□□□□□ -0.51
HSPG2P98160 NSUN5P2-203ENST00000457352 1529 ntBASIC11.88□□□□□ -0.51
HSPG2P98160 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC11.88□□□□□ -0.51
HSPG2P98160 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC11.88□□□□□ -0.51
HSPG2P98160 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
HSPG2P98160 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 HNRNPA1P28-201ENST00000424481 961 ntBASIC11.88□□□□□ -0.51
HSPG2P98160 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 HLA-J-203ENST00000494367 1087 ntBASIC11.88□□□□□ -0.51
HSPG2P98160 CDV3-207ENST00000508481 661 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 LITAF-211ENST00000572255 516 ntTSL 4 BASIC11.88□□□□□ -0.51
HSPG2P98160 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
HSPG2P98160 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC11.88□□□□□ -0.51
HSPG2P98160 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
HSPG2P98160 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC11.88□□□□□ -0.51
HSPG2P98160 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC11.88□□□□□ -0.51
HSPG2P98160 AC116407.3-201ENST00000623905 1129 ntBASIC11.88□□□□□ -0.51
HSPG2P98160 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 FAM8A3P-201ENST00000427218 844 ntBASIC11.87□□□□□ -0.51
HSPG2P98160 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 CASK-201ENST00000378154 2494 ntTSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 PLK5-205ENST00000642079 1969 ntBASIC11.87□□□□□ -0.51
HSPG2P98160 GALC-202ENST00000393568 2054 ntTSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC11.87□□□□□ -0.51
HSPG2P98160 AC034105.1-201ENST00000563488 319 ntBASIC11.87□□□□□ -0.51
HSPG2P98160 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 UBC-206ENST00000538617 1303 ntTSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
HSPG2P98160 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC11.87□□□□□ -0.51
HSPG2P98160 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HSPG2P98160 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HSPG2P98160 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
HSPG2P98160 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HSPG2P98160 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HSPG2P98160 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms